MirGeneDB 3.0

MirGeneDB ID

Cel-Mir-1817

Family name MIR-1817 (all species)
Seed AGCCAAU
Species Roundworm (Caenorhabditis elegans)
MiRBase ID cel-mir-1817
Paralogues
Orthologues Cbr-Mir-1817 
Node of Origin (locus) Caenorhabditis
Node of Origin (family) Caenorhabditis
Genome context
(ce11)
chrI: 10869388-10869454 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UUUGAAAAAAUGUACAUUUCAAUUUUCGAGUAGCCAAUGUCUUCUCUAUCAUGCAUUUUACAAAUAAUGAGUACAUGAUAGUGAAAUAUUUGCUUCCUGAAUUUCAGAGAUGUUUUUUUUUGUCUAG
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Structure
        10         20         30        40        50        60   
UUUGAAAAAAUGUACAU-   AAUU-|   AGU   C     C   U        CAUUUUACA 
                  UUC     UUCG   AGC AAUGU UUC CUAUCAUG         A
                  GAG     AAGU   UCG UUAUA AAG GAUAGUAC         A
GAUCUGUUUUUUUUUGUA   ACUUU^   CCU   U     -   U        AUGAGUAAU 
     120       110       100        90         80        70
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
 +
Da Ea Mi Wi Yo Yo
Mature sequence

Cel-Mir-1817_5p

mirBase accessionMIMAT0006584
Sequence
0- UAGCCAAUGUCUUCUCUAUCAUG -23
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Proposed targets microrna.org: MIMAT0006584
TargetScanWorm: cel-miR-1817
Star sequence

Cel-Mir-1817_3p*

mirBase accessionNone
Sequence
45- UGAUAGUGAAAUAUUUGCUUCC -67
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