MirGeneDB 3.0
MirGeneDB ID

Cbr-Mir-248-v1

Family name MIR-248 (all species)
Seed UACACGU
Species Roundworm (Caenorhabditis briggsae)
MiRBase ID cbr-mir-248
Paralogues Cbr-Mir-248-v2 
Orthologues Cel-Mir-248-v1 
Node of Origin (locus) Caenorhabditis
Node of Origin (family) Caenorhabditis
Genome context
(CB4)		 X: 4543339-4543400 [+] Ensembl
Clustered miRNAs
(< 50kb from Mir-248-v1)		 Mir-248-v1 X: 4543339-4543400 [+] Ensembl
Mir-248-v2 X: 4543339-4543400 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
UUUUUUUAUUGCAAACUGAUAUUCACGAUAAGCGCUAUCCUUCCGUUGUAUUCAAGCUUGGUUGUCGAGUACACGUGCUCGGAUAACGCUCAUCGAGUCUGAUCGGUUAUGUUGGUAAAGUU
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Structure
        10         20         30        40          50          
UUUUUUUAUUGCAAACU-   AUUCA-    A    C     UUC--|  U      AAGCUU 
                  GAU      CGAU AGCG UAUCC     CGU GUAUUC      \
                  CUA      GCUA UCGC AUAGG     GCA CAUGAG      G
UUGAAAUGGUUGUAUUGG   GUCUGA    C    A     CUCGU^  -      CUGUUG 
120       110       100        90        80         70
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14)
Tissue expression
-   +
Ea Ma Wh Wh Wh Wh Wh Wh Wh Wh Wh Wh Wh Wh Wh Wh Wh Wh Yo Yo
Star sequence

Cbr-Mir-248-v1_5p*
mirBase accessionNone
Sequence 
0- AGCGCUAUCCUUCCGUUGUAUUC -23
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Mature sequence

Cbr-Mir-248-v1_3p
mirBase accessionMIMAT0000504
Sequence 
38- GUACACGUGCUCGGAUAACGCUCA -62
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