| MirGeneDB ID | Cbr-Mir-254 |
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| Family name |
MIR-254 (all species) |
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| Seed |
ACAGAAG |
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| Species |
Roundworm (Caenorhabditis briggsae) |
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| MiRBase ID |
cbr-mir-254
|
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| Paralogues |
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| Orthologues |
Cel-Mir-254
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| Node of Origin (locus) |
Caenorhabditis
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| Node of Origin (family) |
Caenorhabditis
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Genome context
(CB4) |
X: 5253102-5253162 [+]
Ensembl
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Precursor
(pre-Mir +30nt flank) |
CAGCACCUCCACUCUAUGCGGGUUGCCGUAUACAGAAGCAUCGAUUUUCACACGCCAUGAUGCGCCUGUGCAAAUCUUUUGCAACUGUAUACGGCGAUUUAGCAGACCAUAUUGCACCUUG
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
CAGCACCUCCACUCUAU- - AA UC-| U CGCCAU
GC GGGUUGCCGUAUACAG GCA GAUUU CACA G
CG UUUAGCGGCAUAUGUC CGU CUAAA GUGU A
GUUCCACGUUAUACCAGA A AA UUU^ C CCGCGU
. 110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
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| Motifs | UG at 5p(-14) |
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Tissue expression
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| Ea |
Ma |
Wh |
Wh |
Wh |
Wh |
Wh |
Wh |
Wh |
Wh |
Wh |
Wh |
Wh |
Wh |
Wh |
Wh |
Wh |
Wh |
Yo |
Yo |
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| Mature sequence |
Cbr-Mir-254_5p |
| mirBase accession | None |
|---|
| Sequence |
0- UACAGAAGCAUCGAUUUUCACA -22
Get sequence
|
|---|
| Star sequence |
Cbr-Mir-254_3p* |
| mirBase accession | MIMAT0001307 |
|---|
| Sequence |
38- UGCAAAUCUUUUGCAACUGUAUA -61
Get sequence
|
|---|
