| MirGeneDB ID | Cbr-Mir-789 |
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| Family name |
MIR-789 (all species) |
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| Seed |
ACGUGGU |
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| Species |
Roundworm (Caenorhabditis briggsae) |
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| MiRBase ID |
cbr-mir-789
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| Paralogues |
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| Orthologues |
Cel-Mir-789-P1
Cel-Mir-789-P2
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| Node of Origin (locus) |
Caenorhabditis
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| Node of Origin (family) |
Caenorhabditis
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Genome context
(CB4) |
V: 3561079-3561142 [+]
Ensembl
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Precursor
(pre-Mir +30nt flank) |
ACUAUUUCAACUUUUGCCCGACUUCGGAUUCACGUGGUCAUCCAGGCGGUGCACGUUAAAAGAUAUAAAUGCCCUGCCUGGGUCACCAUGUGAAUAGGGAAUACGGUCAGCUUAACUUGUUAAU
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
ACUAUUUCAACUUUUGC- AC-| GG C U CGUUAAA
CCG UUC AUUCACGUGGU AUCCAGGCGG GCA A
GGC AGG UAAGUGUACCA UGGGUCCGUC CGU G
UAAUUGUUCAAUUCGACU AUA^ GA C C AAAUAUA
120 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
|
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| Comment | There is a second Dicer cut -1 on both arms. |
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| 3' NTU |
No
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| Motifs | No |
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Tissue expression
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| Ea |
Ma |
Wh |
Wh |
Wh |
Wh |
Wh |
Wh |
Wh |
Wh |
Wh |
Wh |
Wh |
Wh |
Wh |
Wh |
Wh |
Wh |
Yo |
Yo |
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| Mature sequence |
Cbr-Mir-789_5p |
| mirBase accession | None |
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| Sequence |
0- CACGUGGUCAUCCAGGCGGUGCA -23
Get sequence
|
|---|
| Star sequence |
Cbr-Mir-789_3p* |
| mirBase accession | MIMAT0004291 |
|---|
| Sequence |
41- CCCUGCCUGGGUCACCAUGUGAA -64
Get sequence
|
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