MirGeneDB 3.0

MirGeneDB ID

Cel-Mir-789-P1

Family name MIR-789 (all species)
Seed AUUGAUG
Species Roundworm (Caenorhabditis elegans)
MiRBase ID cel-mir-789-1
Paralogues Cel-Mir-789-P2 
Orthologues Cbr-Mir-789 
Node of Origin (locus) C. elegans
Node of Origin (family) Caenorhabditis
Genome context
(ce11)
chrIV: 16740708-16740773 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GUGAAUCAGACGAAUGUCCUGAAGGCAGGCAAUUGAUGACCCAGACAAGGACUAAUCAAGAUUGUCGAUCUAGUCCCUGCCUGGGUCACCAAUUGUCGGCCCCCGCGGGCAAAGAAUAUAUACUUU
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Structure
        10          20        30        40        50        60  
GUGAAUCAGACGAAUGU-  -| AA   A        A        A  A     AAUCAAGA 
                  CC UG  GGC GGCAAUUG UGACCCAG CA GGACU        U
                  GG GC  CCG CUGUUAAC ACUGGGUC GU CCUGA        U
UUUCAUAUAUAAGAAACG  C^ CC   G        C        C  C     UCUAGCUG 
    120       110       100        90        80        70
Deep sequencing
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CommentThere is a second Dicer cut -1 on both arms.
3' NTU No
MotifsNo
Tissue expression
 +
Da Ea Mi Wi Yo Yo
Mature sequence

Cel-Mir-789-P1_5p

mirBase accessionMIMAT0032016
Sequence
0- AAUUGAUGACCCAGACAAGGACU -23
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Star sequence

Cel-Mir-789-P1_3p*

mirBase accessionMIMAT0004224
Sequence
43- UCCCUGCCUGGGUCACCAAUUGU -66
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Proposed targets microrna.org: MIMAT0004224
TargetScanWorm: cel-miR-789