MirGeneDB 3.0

MirGeneDB ID

Cel-Mir-789-P2

Family name MIR-789 (all species)
Seed AUUGAUG
Species Roundworm (Caenorhabditis elegans)
MiRBase ID cel-mir-789-2
Paralogues Cel-Mir-789-P1 
Orthologues Cbr-Mir-789 
Node of Origin (locus) C. elegans
Node of Origin (family) Caenorhabditis
Genome context
(ce11)
chrIV: 17309322-17309387 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AUGAAUCAGACGAAUGUCCUGAAGGCGGACAAUUGAUGACUCAGGCAGGGACUAAUCAUGAUUGUCGAUUUAGUCCCUGCCUGGGUCACCAAUUGUCGGCCCCCGCGGACAAAGAAUAUAUACUUU
Get precursor sequence
Structure
        10          20        30        40        50        60  
AUGAAUCAGACGAAUGU-  -| AA   G        A                 AAUCAUGA 
                  CC UG  GGC GACAAUUG UGACUCAGGCAGGGACU        U
                  GG GC  CCG CUGUUAAC ACUGGGUCCGUCCCUGA        U
UUUCAUAUAUAAGAAACA  C^ CC   G        C                 UUUAGCUG 
    120       110       100        90        80        70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsNo
Tissue expression
 +
Da Ea Mi Wi Yo Yo
Mature sequence

Cel-Mir-789-P2_5p

mirBase accessionMIMAT0032017
Sequence
0- AAUUGAUGACUCAGGCAGGGACU -23
Get sequence
Star sequence

Cel-Mir-789-P2_3p*

mirBase accessionMIMAT0004224
Sequence
43- UCCCUGCCUGGGUCACCAAUUGU -66
Get sequence
Proposed targets microrna.org: MIMAT0004224
TargetScanWorm: cel-miR-789