MirGeneDB 3.0
MirGeneDB ID

Cin-Mir-135-P7

Family name MIR-135 (all species)
Seed AUGGCUU
Species Sea Squirt (Ciona intestinalis)
MiRBase ID cin-mir-132-2
Paralogues Cin-Mir-135-P8 
Orthologues
Node of Origin (locus) C. intestinalis
Node of Origin (family) Chordata
Genome context
(ci3)		 HT000116.1: 70787-70845 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-135-P7)		 Mir-135-P7 HT000116.1: 70787-70845 [+] UCSC Ensembl
Mir-135-P8 HT000116.1: 71231-71286 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GUUAUUUAUCCAGUAAUGCUCUGUUCUAGCUAUGGCUUUUACAUUCCUGUGUGUAUAUUAAUGCAGUACACACAGUAUGUUGCCAUGCCUGGAGGUUGGCACUUUCAACGAAUCUGAUA
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Structure
        10          20        30        40        50        60 
GUUAUUUAUCCAGUAAU--|  CUG      C      UUUU    UC        AUAUUA 
                   GCU   UUCUAG UAUGGC    ACAU  CUGUGUGU      \
                   CGG   GAGGUC GUACCG    UGUA  GACACACA      A
AUAGUCUAAGCAACUUUCA^  UUG      C      U---    U-        UGACGU 
       110       100        90           80         70
Deep sequencing
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CommentmiRBase named this gene "mir-132-2" but it is clearly a Mir-135 family member not a Mir-132.
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
-   +
C- C- C- C- C- C- C- C- C- C- Ga La La
Mature sequence

Cin-Mir-135-P7_5p
mirBase accessionMIMAT0016425
Sequence 
0- UAUGGCUUUUACAUUCCUGUGUGU -24
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Star sequence

Cin-Mir-135-P7_3p*
mirBase accessionNone
Sequence 
38- CACACAGUAUGUUGCCAUGCC -59
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