MirGeneDB 2.1
MirGeneDB ID

Cin-Mir-4014-P2

Family name MIR-4014 (all species)
Seed UACAGAA
Species Sea Squirt (Ciona intestinalis)
MiRBase ID cin-mir-4014-1
Paralogues Cin-Mir-4014-P1 
Orthologues
Node of Origin (locus) C. intestinalis
Node of Origin (family) C. intestinalis
Genome context
(ci3)		 12: 3135786-3135842 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-4014-P2)		 Mir-4014-P1 12: 3135494-3135548 [+] UCSC Ensembl
Mir-4014-P2 12: 3135786-3135842 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AUGGUCUAAAAAUCAGAGCGUUUAGUGUUUGCUACGCAGACUUUCUGUACUGUAAUUUGAAACAUUACAGAAAGCGUGUGUGUGCUAAAACUGCGCUUAUUAUCUUCUACGAACCUG
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Structure
        10            20        30         40        50       
AUGGUCUAAAAAUCAGA----|   UU   GUUU  -      GA         C  UAAU 
                     GCGU  AGU    GC UACGCA  CUUUCUGUA UG    U
                     CGCG  UCA    CG GUGUGU  GAAAGACAU AC    U
GUCCAAGCAUCUUCUAUUAUU^   --   AAAU  U      GC         U  AAAG 
     110       100          90        80        70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Cr Cr Cr Cr Cr Cr Cr Cr Cr Cr Ga La La
Star sequence

Cin-Mir-4014-P2_5p*
mirBase accessionMIMAT0016518
Sequence 
0- GCUACGCAGACUUUCUGUACUG -22
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Mature sequence

Cin-Mir-4014-P2_3p
mirBase accessionMIMAT0016519
Sequence 
34- UUACAGAAAGCGUGUGUGUGCUA -57
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