MirGeneDB 3.0
MirGeneDB ID

Cin-Mir-4046

Family name MIR-4046 (all species)
Seed CAGUAAC
Species Sea Squirt (Ciona intestinalis)
MiRBase ID cin-mir-4046
Paralogues
Orthologues
Node of Origin (locus) C. intestinalis
Node of Origin (family) C. intestinalis
Genome context
(ci3)		 HT000823.1: 87428-87487 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-4046)		 Mir-4073 HT000823.1: 87062-87115 [+] UCSC Ensembl
Mir-4046 HT000823.1: 87428-87487 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AUAUACACCCCCUGUACCAGGUUACCAACUCAGGGUGUUGCGUGUUACUUGUGUAUUAUGACAUCAUCAGUAACACGAAUACGUCCUGGAUUGUUCCAUGGUGAUGUCAUCAAUUGGAUU
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Structure
        10            20        30        40         50         
AUAUACACCCCCUGUAC---  -| UUAC   CU    GU  UG-         U   UAUUA 
                    CA GG    CAA  CAGG  GU   CGUGUUACU GUG     \
                    GU CC    GUU  GUCC  CA   GCACAAUGA UAC     U
UUAGGUUAACUACUGUAGUG  A^ UU--   AG    UG  UAA         C   UACAG 
.       110       100          90        80        70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
C- C- C- C- C- C- C- C- C- C- Ga La La
Star sequence

Cin-Mir-4046_5p*
mirBase accessionMIMAT0016581
Sequence 
0- CAGGGUGUUGCGUGUUACUUGUG -23
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Mature sequence

Cin-Mir-4046_3p
mirBase accessionMIMAT0016582
Sequence 
36- UCAGUAACACGAAUACGUCCUGGA -60
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