MirGeneDB 3.0
MirGeneDB ID

Cin-Mir-4073

Family name MIR-4073 (all species)
Seed AGGAUGU
Species Sea Squirt (Ciona intestinalis)
MiRBase ID cin-mir-4073
Paralogues
Orthologues
Node of Origin (locus) C. intestinalis
Node of Origin (family) C. intestinalis
Genome context
(ci3)		 HT000823.1: 87062-87115 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-4073)		 Mir-4073 HT000823.1: 87062-87115 [+] UCSC Ensembl
Mir-4046 HT000823.1: 87428-87487 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UCUAACCCCAUAUACCCGCACACCCCCACCACGACAAGUAGGGUCCUUUUGCGUCACCAUCGCAGGAUGUUCGACUUGUUGUGUUGGUGGUGUUGCAUAGACAUCAUAUAUCAU
Get precursor sequence
Structure
        10          20        30        40        50       
UCUAACCCCAUAUACCC-  -|    C   C          A GG CC       UCA 
                  GC ACACC CCA CACGACAAGU G  U  UUUUGCG   \
                  CG UGUGG GGU GUGUUGUUCA C  G  AGGACGC   C
UACUAUAUACUACAGAUA  U^    U   U          G UU U-       UAC 
  110       100        90        80        70         60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
C- C- C- C- C- C- C- C- C- C- Ga La La
Star sequence

Cin-Mir-4073_5p*
mirBase accessionMIMAT0016634
Sequence 
0- ACGACAAGUAGGGUCCUUUUGCG -23
Get sequence
Mature sequence

Cin-Mir-4073_3p
mirBase accessionMIMAT0016635
Sequence 
32- CAGGAUGUUCGACUUGUUGUGU -54
Get sequence