MirGeneDB 3.0
MirGeneDB ID

Cin-Mir-4052

Family name MIR-4052 (all species)
Seed CACUUGA
Species Sea Squirt (Ciona intestinalis)
MiRBase ID cin-mir-4052
Paralogues
Orthologues
Node of Origin (locus) C. intestinalis
Node of Origin (family) C. intestinalis
Genome context
(ci3)		 HT001175.1: 12120-12173 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-4052)		 Mir-4052 HT001175.1: 12120-12173 [-] UCSC Ensembl
Mir-4037 HT001175.1: 12218-12275 [-] UCSC Ensembl
Mir-4061 HT001175.1: 12325-12379 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UUCAUCGUUUAAUUUUGACCAAUCACCGCCCAGGCUUGCAUUUCAAGUAAGUCACGUGACUCACUUGAAACCCAGGACCUGUUGCUGUGGUUUGGUGACGUCAUCGACACGUGU
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Structure
        10         20         30          40        50     
UUCAUCGUUUAAUUUUG-   -      C  C-    -|   CA        A   CA 
                  ACC AAUCAC GC  CAGG CUUG  UUUCAAGU AGU  C
                  UGG UUGGUG CG  GUCC GGAC  AAAGUUCA UCA  G
UGUGCACAGCUACUGCAG   U      U  UU    A^   CC        C   GU 
  110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
C- C- C- C- C- C- C- C- C- C- Ga La La
Star sequence

Cin-Mir-4052_5p*
mirBase accessionMIMAT0016593
Sequence 
0- CAGGCUUGCAUUUCAAGUAAGU -22
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Mature sequence

Cin-Mir-4052_3p
mirBase accessionMIMAT0016594
Sequence 
30- UCACUUGAAACCCAGGACCUGUUG -54
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