MirGeneDB 3.0
MirGeneDB ID

Cin-Mir-4061

Family name MIR-4061 (all species)
Seed ACACUCU
Species Sea Squirt (Ciona intestinalis)
MiRBase ID cin-mir-4061
Paralogues
Orthologues
Node of Origin (locus) C. intestinalis
Node of Origin (family) C. intestinalis
Genome context
(ci3)		 HT001175.1: 12325-12379 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-4061)		 Mir-4052 HT001175.1: 12120-12173 [-] UCSC Ensembl
Mir-4037 HT001175.1: 12218-12275 [-] UCSC Ensembl
Mir-4061 HT001175.1: 12325-12379 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UCAUGAUUCUCAUUAUUCGCCGAUACAACAAGGCGGUCCCUCAGAUGGUUUCGAUUCUGAAACACUCUGGCGUUCCGUCAUUGGUUGUGCACGGCGCCUGCAUCUCGUGCUGUAU
Get precursor sequence
Structure
        10          20         30          40        50     
UCAUGAUUCUCAUUAUU--     A-      AA--|    UCCC     UG      A 
                   CGCCG  UACAAC    GGCGG    UCAGA  GUUUCG U
                   GCGGC  GUGUUG    CUGCC    GGUCU  CAAAGU U
UAUGUCGUGCUCUACGUCC     AC      GUUA^    UUGC     CA      C 
   110       100        90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
C- C- C- C- C- C- C- C- C- C- Ga La La
Star sequence

Cin-Mir-4061_5p*
mirBase accessionMIMAT0016610
Sequence 
0- AGGCGGUCCCUCAGAUGGUUUCG -23
Get sequence
Mature sequence

Cin-Mir-4061_3p
mirBase accessionMIMAT0016611
Sequence 
30- AACACUCUGGCGUUCCGUCAUUGGU -55
Get sequence