| MirGeneDB ID | Cja-Mir-3140 |
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| Family name |
MIR-3140 (all species) |
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| Seed |
GCUUUUG |
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| Species |
White-tufted-ear marmoset (Callithrix jacchus) |
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| MiRBase ID |
|
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| Paralogues |
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| Orthologues |
Hsa-Mir-3140
Mml-Mir-3140
Mmr-Mir-3140
Pab-Mir-3140
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| Node of Origin (locus) |
Primates
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| Node of Origin (family) |
Primates
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Genome context
(GCA_011100555.2_mCalJa1.2.pat.X_genomic) |
CM021917.1: 40275757-40275825 [+]
UCSC
Ensembl
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Precursor
(pre-Mir +30nt flank) |
GGAAGUCUACCAUUCAUGUCCUUUUGAGGUACCUGAAUUACCAAAACCUUUAUGUGUUCUGAAGUUAUUGAAAAUAAUAGCUUUUGGGAACUCAGGUAGUUCAGGAGCGACCUUUCUAAAAAACAGAUG
Get precursor sequence
|
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| Structure | 10 20 30 40 50 60
GGAAGUCUACCAUUCAU- -| G A A C UUAUGUGUUCUGAA
GUC CUUUUGAG UACCUGA UU CCAAAA CU \
CAG GAGGACUU AUGGACU AA GGUUUU GA G
GUAGACAAAAAAUCUUUC C^ G C G C UAAUAAAAGUUAUU
120 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
Unknown
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| Motifs | UG at 5p(-14) |
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Tissue expression
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| Star sequence |
Cja-Mir-3140_5p* (predicted) |
| mirBase accession | None |
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| Sequence |
0- ACCUGAAUUACCAAAACCUUU -21
Get sequence
|
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| Mature sequence |
Cja-Mir-3140_3p (predicted) |
| mirBase accession | None |
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| Sequence |
48- AGCUUUUGGGAACUCAGGUAG -69
Get sequence
|
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