| MirGeneDB ID | Cja-Mir-3140 |
|---|---|
| Family name | MIR-3140 (all species) |
| Seed | GCUUUUG |
| Species | White-tufted-ear marmoset (Callithrix jacchus) |
| MiRBase ID | |
| Paralogues | |
| Orthologues | Hsa-Mir-3140 Mml-Mir-3140 Mmr-Mir-3140 Pab-Mir-3140 |
| Node of Origin (locus) | Primates |
| Node of Origin (family) | Primates |
| Genome context (GCA_011100555.2_mCalJa1.2.pat.X_genomic) |
CM021917.1: 40275757-40275825 [+] UCSC Ensembl |
| Precursor (pre-Mir +30nt flank) | GGAAGUCUACCAUUCAUGUCCUUUUGAGGUACCUGAAUUACCAAAACCUUUAUGUGUUCUGAAGUUAUUGAAAAUAAUAGCUUUUGGGAACUCAGGUAGUUCAGGAGCGACCUUUCUAAAAAACAGAUGGet precursor sequence |
| Structure | 10 20 30 40 50 60 GGAAGUCUACCAUUCAU- -| G A A C UUAUGUGUUCUGAA GUC CUUUUGAG UACCUGA UU CCAAAA CU \ CAG GAGGACUU AUGGACU AA GGUUUU GA G GUAGACAAAAAAUCUUUC C^ G C G C UAAUAAAAGUUAUU 120 110 100 90 80 70 |
| Deep sequencing | |
| 3' NTU | Unknown |
| Motifs | UG at 5p(-14) |
| Star sequence | Cja-Mir-3140_5p* (predicted) |
| mirBase accession | None |
| Sequence |
0- ACCUGAAUUACCAAAACCUUU -21
Get sequence
|
| Mature sequence | Cja-Mir-3140_3p (predicted) |
| mirBase accession | None |
| Sequence |
48- AGCUUUUGGGAACUCAGGUAG -69
Get sequence
|
