| MirGeneDB ID | Pab-Mir-3140 |
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| Family name |
MIR-3140 (all species) |
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| Seed |
GCUUUUG |
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| Species |
Sumatran orangutan (Pongo abelii) |
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| MiRBase ID |
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| Paralogues |
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| Orthologues |
Cja-Mir-3140
Hsa-Mir-3140
Mml-Mir-3140
Mmr-Mir-3140
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| Node of Origin (locus) |
Primates
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| Node of Origin (family) |
Primates
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Genome context
(GCA_028885655.2_NHGRI_mPonAbe1-v2.0_traces) |
CM054682.2: 174362592-174362660 [-]
UCSC
Ensembl
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Precursor
(pre-Mir +30nt flank) |
GGAAGCCUACCAUUUAUGUCCUCUUGAGGUACCUGAAUUACCAAAAGCUUUAUGUAUUCUGAAGUUAUUGAAAAUAAGAGCUUUUGGGAAUUCAGGUAGUUCAGGAGUGACUUUUCUAAAAAACAGACC
Get precursor sequence
|
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| Structure | 10 20 30 40 50 60
GGAAGCCUACCAUUUAU- -| G A AUGUAUUCUGAA
GUC CUCUUGAG UACCUGAAUU CCAAAAGCUUU \
CAG GAGGACUU AUGGACUUAA GGUUUUCGAGA G
CCAGACAAAAAAUCUUUU U^ G G AUAAAAGUUAUU
120 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
Unknown
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| Motifs | UG at 5p(-14) |
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Tissue expression
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| Star sequence |
Pab-Mir-3140_5p* (predicted) |
| mirBase accession | None |
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| Sequence |
0- ACCUGAAUUACCAAAAGCUUU -21
Get sequence
|
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| Mature sequence |
Pab-Mir-3140_3p (predicted) |
| mirBase accession | None |
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| Sequence |
48- AGCUUUUGGGAAUUCAGGUAG -69
Get sequence
|
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