| MirGeneDB ID | Cja-Mir-4677 |
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| Family name |
MIR-4677 (all species) |
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| Seed |
CUGUAAG |
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| Species |
White-tufted-ear marmoset (Callithrix jacchus) |
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| MiRBase ID |
|
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| Paralogues |
|
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| Orthologues |
Hsa-Mir-4677
Mml-Mir-4677
Mmr-Mir-4677
Pab-Mir-4677
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| Node of Origin (locus) |
Primates
|
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| Node of Origin (family) |
Primates
|
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Genome context
(GCA_011100555.2_mCalJa1.2.pat.X_genomic) |
CM021933.1: 39082517-39082575 [-]
UCSC
Ensembl
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Precursor
(pre-Mir +30nt flank) |
CAUGGAUGAUUUGGAGUAGCAAAGCAGCAAUUGUUCUUUGGUCUUUCAGCCAUGACCUGACCUUCUGUCUGUAAGACCAAAGAACUACUUUGCUUGGCCACCAUCUGCACUCAAGAGAG
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
CAUGGAUGAUUUGGAGUA---| A CAAUU U C UGACCU
GC AAGCAG GUUCUUUGGUCUU CAG CA \
CG UUCGUU CAAGAAACCAGAA GUC GU G
GAGAGAACUCACGUCUACCAC^ G UCAU- U U CUUCCA
110 100 90 80 70 60 |
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| Deep sequencing |
|
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| 3' NTU |
Unknown
|
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
|
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| Star sequence |
Cja-Mir-4677_5p* (predicted) |
| mirBase accession | None |
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| Sequence |
0- UUGUUCUUUGGUCUUUCAGCCA -22
Get sequence
|
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| Mature sequence |
Cja-Mir-4677_3p (predicted) |
| mirBase accession | None |
|---|
| Sequence |
37- UCUGUAAGACCAAAGAACUACU -59
Get sequence
|
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