MirGeneDB 3.0
MirGeneDB ID

Cja-Mir-552

Family name MIR-552 (all species)
Seed GUUAAAC
Species White-tufted-ear marmoset (Callithrix jacchus)
MiRBase ID
Paralogues
Orthologues Hsa-Mir-552  Mml-Mir-552  Pab-Mir-552 
Node of Origin (locus) Simiiformes
Node of Origin (family) Simiiformes
Genome context
(GCA_011100555.2_mCalJa1.2.pat.X_genomic)		 CM021921.1: 68337185-68337243 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UUGUAAUAGUCAAUUAUGCCACAGUUUGUUUGUUAAACCAUUCACCUGUUGGUUGAAGAUACCUUUUAACAAGUGAAUGGUUAGACAAACUGUGGUAUAUACACAUUAUGGAAUACUAC
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Structure
        10              20        30        40        50         
UUGUAAUAGUCAAUUAU------|              UUAA         C      UUGAAG 
                       GCCACAGUUUGUUUG    ACCAUUCAC UGUUGG      \
                       UGGUGUCAAACAGAU    UGGUAAGUG ACAAUU      A
CAUCAUAAGGUAUUACACAUAUA^              ----         A      UUCCAU 
       110       100        90            80        70        60
Deep sequencing
3' NTU Unknown
MotifsUG at 5p(-14)
Tissue expression
-   +
To
Mature sequence

Cja-Mir-552_5p (predicted)
mirBase accessionNone
Sequence 
0- UGUUAAACCAUUCACCUGUUGG -22
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Co-mature sequence

Cja-Mir-552_3p (predicted)
mirBase accessionNone
Sequence 
37- AACAAGUGAAUGGUUAGACAAA -59
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