| MirGeneDB ID | Cja-Mir-552 |
|---|---|
| Family name | MIR-552 (all species) |
| Seed | GUUAAAC |
| Species | White-tufted-ear marmoset (Callithrix jacchus) |
| MiRBase ID | |
| Paralogues | |
| Orthologues | Hsa-Mir-552 Mml-Mir-552 Pab-Mir-552 |
| Node of Origin (locus) | Simiiformes |
| Node of Origin (family) | Simiiformes |
| Genome context (GCA_011100555.2_mCalJa1.2.pat.X_genomic) |
CM021921.1: 68337185-68337243 [-] UCSC Ensembl |
| Precursor (pre-Mir +30nt flank) | UUGUAAUAGUCAAUUAUGCCACAGUUUGUUUGUUAAACCAUUCACCUGUUGGUUGAAGAUACCUUUUAACAAGUGAAUGGUUAGACAAACUGUGGUAUAUACACAUUAUGGAAUACUACGet precursor sequence |
| Structure | 10 20 30 40 50 UUGUAAUAGUCAAUUAU------| UUAA C UUGAAG GCCACAGUUUGUUUG ACCAUUCAC UGUUGG \ UGGUGUCAAACAGAU UGGUAAGUG ACAAUU A CAUCAUAAGGUAUUACACAUAUA^ ---- A UUCCAU 110 100 90 80 70 60 |
| Deep sequencing | |
| 3' NTU | Unknown |
| Motifs | UG at 5p(-14) |
| Mature sequence | Cja-Mir-552_5p (predicted) |
| mirBase accession | None |
| Sequence |
0- UGUUAAACCAUUCACCUGUUGG -22
Get sequence
|
| Co-mature sequence | Cja-Mir-552_3p (predicted) |
| mirBase accession | None |
| Sequence |
37- AACAAGUGAAUGGUUAGACAAA -59
Get sequence
|
