MirGeneDB 3.0

MirGeneDB ID

Pab-Mir-552

Family name MIR-552 (all species)
Seed GUUUAAC
Species Sumatran orangutan (Pongo abelii)
MiRBase ID
Paralogues
Orthologues Cja-Mir-552  Hsa-Mir-552  Mml-Mir-552 
Node of Origin (locus) Simiiformes
Node of Origin (family) Simiiformes
Genome context
(GCA_028885655.2_NHGRI_mPonAbe1-v2.0_traces)
CM054679.2: 198883175-198883233 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UUUGUUCAACCAUUCAAAUAUACCACAGUUUGUUUAACCUUUCGCGUGUUGGUUGAAGAUGCCUUUCAACAGGUGACUGGUUAGACAAACUGUGGUAUAUACACAGGAUGGAAUACUAC
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Structure
        10          20        30        40        50         
UUUGUUCAACCAUUCAA--|                     UU    G      UUGAAG 
                   AUAUACCACAGUUUGUUUAACC  UCGC UGUUGG      \
                   UAUAUGGUGUCAAACAGAUUGG  AGUG ACAACU      A
CAUCAUAAGGUAGGACACA^                     UC    G      UUCCGU 
       110       100        90        80        70        60
Deep sequencing
3' NTU No
MotifsNo
Tissue expression
 +
Br Br Li Li
Mature sequence

Pab-Mir-552_5p (predicted)

mirBase accessionNone
Sequence
0- UGUUUAACCUUUCGCGUGUUGG -22
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Co-mature sequence

Pab-Mir-552_3p (predicted)

mirBase accessionNone
Sequence
37- AACAGGUGACUGGUUAGACAAA -59
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