MirGeneDB ID | Pab-Mir-552 |
Family name |
MIR-552 (all species) |
Seed |
GUUUAAC |
Species |
Sumatran orangutan (Pongo abelii) |
MiRBase ID |
|
Paralogues |
|
Orthologues |
Cja-Mir-552
Hsa-Mir-552
Mml-Mir-552
|
Node of Origin (locus) |
Simiiformes
|
Node of Origin (family) |
Simiiformes
|
Genome context (GCA_028885655.2_NHGRI_mPonAbe1-v2.0_traces) |
CM054679.2: 198883175-198883233 [+]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
UUUGUUCAACCAUUCAAAUAUACCACAGUUUGUUUAACCUUUCGCGUGUUGGUUGAAGAUGCCUUUCAACAGGUGACUGGUUAGACAAACUGUGGUAUAUACACAGGAUGGAAUACUAC
Get precursor sequence
|
Structure | 10 20 30 40 50
UUUGUUCAACCAUUCAA--| UU G UUGAAG
AUAUACCACAGUUUGUUUAACC UCGC UGUUGG \
UAUAUGGUGUCAAACAGAUUGG AGUG ACAACU A
CAUCAUAAGGUAGGACACA^ UC G UUCCGU
110 100 90 80 70 60 |
Deep sequencing |
|
3' NTU |
No
|
Motifs | No |
Tissue expression
|
|
Mature sequence |
Pab-Mir-552_5p (predicted) |
mirBase accession | None |
Sequence |
0- UGUUUAACCUUUCGCGUGUUGG -22
Get sequence
|
Co-mature sequence |
Pab-Mir-552_3p (predicted) |
mirBase accession | None |
Sequence |
37- AACAGGUGACUGGUUAGACAAA -59
Get sequence
|