| MirGeneDB ID | Cja-Mir-5579 |
|---|---|
| Family name | MIR-5579 (all species) |
| Seed | UUGGUAC |
| Species | White-tufted-ear marmoset (Callithrix jacchus) |
| MiRBase ID | |
| Paralogues | |
| Orthologues | Hsa-Mir-5579 Pab-Mir-5579 |
| Node of Origin (locus) | Simiiformes |
| Node of Origin (family) | Simiiformes |
| Genome context (GCA_011100555.2_mCalJa1.2.pat.X_genomic) |
CM021925.1: 57831081-57831138 [+] UCSC Ensembl |
| Precursor (pre-Mir +30nt flank) | GUGUGUGUAAGAACCAUGUGGGUGAUUUGAUUUGGUACUCCUUAAGCUAACAGGCCCAUGUCACCAUUAGCUUAAGGAGUACCAGAUCAAAGCACUCACAGUGUGGAGGUGAACAGAGGet precursor sequence |
| Structure | 10 20 30 40 50 GUGUGUGUAAGAACCAU--| A CAGGCCC GUGGGUG UUUGAUUUGGUACUCCUUAAGCUAA A CACUCAC AAACUAGACCAUGAGGAAUUCGAUU U GAGACAAGUGGAGGUGUGA^ G ACCACUG 110 100 90 80 70 60 |
| Deep sequencing | |
| 3' NTU | Unknown |
| Motifs | UG at 5p(-14) |
| Mature sequence | Cja-Mir-5579_5p (predicted) |
| mirBase accession | None |
| Sequence |
0- UUUGGUACUCCUUAAGCUAACA -22
Get sequence
|
| Star sequence | Cja-Mir-5579_3p* (predicted) |
| mirBase accession | None |
| Sequence |
36- UUAGCUUAAGGAGUACCAGAUC -58
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|
