| MirGeneDB ID | Pab-Mir-5579 |
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| Family name |
MIR-5579 (all species) |
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| Seed |
AUGGUAC |
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| Species |
Sumatran orangutan (Pongo abelii) |
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| MiRBase ID |
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| Paralogues |
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| Orthologues |
Cja-Mir-5579
Hsa-Mir-5579
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| Node of Origin (locus) |
Simiiformes
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| Node of Origin (family) |
Simiiformes
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Genome context
(GCA_028885655.2_NHGRI_mPonAbe1-v2.0_traces) |
CM054688.2: 81489775-81489832 [-]
UCSC
Ensembl
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Precursor
(pre-Mir +30nt flank) |
GUGUGUGUAAGAACCAUGUGGGUGAUUUAAUAUGGUACUCCUUAAGCUAACAGGCCCCUGUCACCGUUCGCUUAAGGAGUACCAGGUCAAAUCACCCACAAACACUGUGGAGGUGAAC
Get precursor sequence
|
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| Structure | 10 20 30 40 50
GUGUGUGUAAGAACCAU--| A A U AGGCCC
GUGGGUGAUUU AU UGGUACUCCUUAAGC AAC C
CACCCACUAAA UG ACCAUGAGGAAUUCG UUG U
CAAGUGGAGGUGUCACAAA^ C G C CCACUG
110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
Unknown
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| Motifs | UG at 5p(-14) |
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Tissue expression
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| Mature sequence |
Pab-Mir-5579_5p (predicted) |
| mirBase accession | None |
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| Sequence |
0- UAUGGUACUCCUUAAGCUAACA -22
Get sequence
|
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| Star sequence |
Pab-Mir-5579_3p* |
| mirBase accession | None |
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| Sequence |
36- UUCGCUUAAGGAGUACCAGGUC -58
Get sequence
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