| MirGeneDB ID | Pab-Mir-5579 |
|---|---|
| Family name | MIR-5579 (all species) |
| Seed | AUGGUAC |
| Species | Sumatran orangutan (Pongo abelii) |
| MiRBase ID | |
| Paralogues | |
| Orthologues | Cja-Mir-5579 Hsa-Mir-5579 |
| Node of Origin (locus) | Simiiformes |
| Node of Origin (family) | Simiiformes |
| Genome context (GCA_028885655.2_NHGRI_mPonAbe1-v2.0_traces) |
CM054688.2: 81489775-81489832 [-] UCSC Ensembl |
| Precursor (pre-Mir +30nt flank) | GUGUGUGUAAGAACCAUGUGGGUGAUUUAAUAUGGUACUCCUUAAGCUAACAGGCCCCUGUCACCGUUCGCUUAAGGAGUACCAGGUCAAAUCACCCACAAACACUGUGGAGGUGAACGet precursor sequence |
| Structure | 10 20 30 40 50 GUGUGUGUAAGAACCAU--| A A U AGGCCC GUGGGUGAUUU AU UGGUACUCCUUAAGC AAC C CACCCACUAAA UG ACCAUGAGGAAUUCG UUG U CAAGUGGAGGUGUCACAAA^ C G C CCACUG 110 100 90 80 70 60 |
| Deep sequencing | |
| 3' NTU | Unknown |
| Motifs | UG at 5p(-14) |
| Mature sequence | Pab-Mir-5579_5p (predicted) |
| mirBase accession | None |
| Sequence |
0- UAUGGUACUCCUUAAGCUAACA -22
Get sequence
|
| Star sequence | Pab-Mir-5579_3p* |
| mirBase accession | None |
| Sequence |
36- UUCGCUUAAGGAGUACCAGGUC -58
Get sequence
|
