| MirGeneDB ID | Cja-Mir-561 |
|---|
| Family name |
MIR-561 (all species) |
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| Seed |
UCAAGGA |
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| Species |
White-tufted-ear marmoset (Callithrix jacchus) |
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| MiRBase ID |
|
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| Paralogues |
|
|---|
| Orthologues |
Hsa-Mir-561
Pab-Mir-561
|
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| Node of Origin (locus) |
Simiiformes
|
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| Node of Origin (family) |
Simiiformes
|
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Genome context
(GCA_011100555.2_mCalJa1.2.pat.X_genomic) |
CM021920.1: 37319502-37319558 [-]
UCSC
Ensembl
|
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Precursor
(pre-Mir +30nt flank) |
UGAAACUUCAUCCACCAGUCCUCCAGGAACAUCAAGGAUCUUAAACUUUGCUGGAUCUACAAAGACAAAGUUUAUAAUUCUUGAAGUUCCUUGGGGAAGCGUGGAUGAUCAUUUUUA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
UGAAACUUCAUCCACCAG-- C A CU -| GGAU
UCCUC AGGAAC UCAAGGAU UAAACUUUG CU C
AGGGG UCCUUG AGUUCUUA AUUUGAAAC GA U
AUUUUUACUAGUAGGUGCGA U A AU A^ AACA
110 100 90 80 70 60 |
|---|
| Deep sequencing |
|
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| 3' NTU |
Unknown
|
|---|
| Motifs | No |
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Tissue expression
|
|
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| Mature sequence |
Cja-Mir-561_5p (predicted) |
| mirBase accession | None |
|---|
| Sequence |
0- AUCAAGGAUCUUAAACUUUGCU -22
Get sequence
|
|---|
| Star sequence |
Cja-Mir-561_3p* (predicted) |
| mirBase accession | None |
|---|
| Sequence |
35- CAAAGUUUAUAAUUCUUGAAGU -57
Get sequence
|
|---|
