MirGeneDB ID | Pab-Mir-561 |
Family name |
MIR-561 (all species) |
Seed |
UCAAGGA |
Species |
Sumatran orangutan (Pongo abelii) |
MiRBase ID |
|
Paralogues |
|
Orthologues |
Cja-Mir-561
Hsa-Mir-561
|
Node of Origin (locus) |
Simiiformes
|
Node of Origin (family) |
Simiiformes
|
Genome context (GCA_028885655.2_NHGRI_mPonAbe1-v2.0_traces) |
ref|NC_036905.1|:74764293-74764556: 104-160 [+]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
UGAAACUUCAUCCACCAGUCCUCCAGGAACAUCAAGGAUCUUAAACUUUGCCAGAGCUACAAAGGCAAAGUUUAAGAUCCUUGAAGUUCCUGGGGGAACCAUGGAUGGCUAUCUUUA
Get precursor sequence
|
Structure | 10 20 30 40 50
UGAAACUUCAUCCACCAG--| A AGAGC
UCCUCCAGGAAC UCAAGGAUCUUAAACUUUGCC \
AGGGGGUCCUUG AGUUCCUAGAAUUUGAAACGG U
AUUUCUAUCGGUAGGUACCA^ A AAACA
110 100 90 80 70 60 |
Deep sequencing |
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|
Comment | Not in assembly but in trace archives. |
3' NTU |
Unknown
|
Motifs | No |
Tissue expression
|
|
Mature sequence |
Pab-Mir-561_5p |
mirBase accession | None |
Sequence |
0- AUCAAGGAUCUUAAACUUUGCC -22
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|
Star sequence |
Pab-Mir-561_3p* (predicted) |
mirBase accession | None |
Sequence |
35- CAAAGUUUAAGAUCCUUGAAGU -57
Get sequence
|