MirGeneDB 3.0

MirGeneDB ID

Pab-Mir-561

Family name MIR-561 (all species)
Seed UCAAGGA
Species Sumatran orangutan (Pongo abelii)
MiRBase ID
Paralogues
Orthologues Cja-Mir-561  Hsa-Mir-561 
Node of Origin (locus) Simiiformes
Node of Origin (family) Simiiformes
Genome context
(GCA_028885655.2_NHGRI_mPonAbe1-v2.0_traces)
ref|NC_036905.1|:74764293-74764556: 104-160 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UGAAACUUCAUCCACCAGUCCUCCAGGAACAUCAAGGAUCUUAAACUUUGCCAGAGCUACAAAGGCAAAGUUUAAGAUCCUUGAAGUUCCUGGGGGAACCAUGGAUGGCUAUCUUUA
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Structure
        10          20        30        40        50        
UGAAACUUCAUCCACCAG--|           A                     AGAGC 
                    UCCUCCAGGAAC UCAAGGAUCUUAAACUUUGCC     \
                    AGGGGGUCCUUG AGUUCCUAGAAUUUGAAACGG     U
AUUUCUAUCGGUAGGUACCA^           A                     AAACA 
     110       100        90        80        70        60
Deep sequencing
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CommentNot in assembly but in trace archives.
3' NTU Unknown
MotifsNo
Tissue expression
 +
Br Br Li Li
Mature sequence

Pab-Mir-561_5p

mirBase accessionNone
Sequence
0- AUCAAGGAUCUUAAACUUUGCC -22
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Star sequence

Pab-Mir-561_3p* (predicted)

mirBase accessionNone
Sequence
35- CAAAGUUUAAGAUCCUUGAAGU -57
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