| MirGeneDB ID | Pab-Mir-561 |
|---|---|
| Family name | MIR-561 (all species) |
| Seed | UCAAGGA |
| Species | Sumatran orangutan (Pongo abelii) |
| MiRBase ID | |
| Paralogues | |
| Orthologues | Cja-Mir-561 Hsa-Mir-561 |
| Node of Origin (locus) | Simiiformes |
| Node of Origin (family) | Simiiformes |
| Genome context (GCA_028885655.2_NHGRI_mPonAbe1-v2.0_traces) |
ref|NC_036905.1|:74764293-74764556: 104-160 [+] UCSC Ensembl |
| Precursor (pre-Mir +30nt flank) | UGAAACUUCAUCCACCAGUCCUCCAGGAACAUCAAGGAUCUUAAACUUUGCCAGAGCUACAAAGGCAAAGUUUAAGAUCCUUGAAGUUCCUGGGGGAACCAUGGAUGGCUAUCUUUAGet precursor sequence |
| Structure | 10 20 30 40 50 UGAAACUUCAUCCACCAG--| A AGAGC UCCUCCAGGAAC UCAAGGAUCUUAAACUUUGCC \ AGGGGGUCCUUG AGUUCCUAGAAUUUGAAACGG U AUUUCUAUCGGUAGGUACCA^ A AAACA 110 100 90 80 70 60 |
| Deep sequencing | |
| Comment | Not in assembly but in trace archives. |
| 3' NTU | Unknown |
| Motifs | No |
| Mature sequence | Pab-Mir-561_5p |
| mirBase accession | None |
| Sequence |
0- AUCAAGGAUCUUAAACUUUGCC -22
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|
| Star sequence | Pab-Mir-561_3p* (predicted) |
| mirBase accession | None |
| Sequence |
35- CAAAGUUUAAGAUCCUUGAAGU -57
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|
