| MirGeneDB ID | Cja-Mir-589 |
|---|---|
| Family name | MIR-589 (all species) |
| Seed | GAGAACC |
| Species | White-tufted-ear marmoset (Callithrix jacchus) |
| MiRBase ID | |
| Paralogues | |
| Orthologues | Hsa-Mir-589 Mml-Mir-589 Pab-Mir-589 |
| Node of Origin (locus) | Primates |
| Node of Origin (family) | Primates |
| Genome context (GCA_011100555.2_mCalJa1.2.pat.X_genomic) |
CM021916.1: 15117650-15117710 [+] UCSC Ensembl |
| Precursor (pre-Mir +30nt flank) | CACAAACUCAAGCCUGUGCCCAGCAGCCGCUGAGAACCACGUCUGCUCUGAGCCGGGUACUGCCUGUUCAGAACAAACACCGCUUCCCAGACGCUGCCAGCUGGCCCCGUUCCUCUGGAUUGet precursor sequence |
| Structure | 10 20 30 40 50 CACAAACUCAAGCCUGU---| CCA CG A CCAC- C C CGGGU GC GCAGC CUG GAA GU UG UCUGAGC A CG CGUCG GAC CUU CA AC AGACUUG C UUAGGUCUCCUUGCCCCGGU^ AC- CA C CGCCA A A UCCGU . 110 100 90 80 70 60 |
| Deep sequencing | |
| Comment | Although absent in M. murinus this locus is present in other lemurs. |
| 3' NTU | Unknown |
| Motifs | UG at 5p(-14) |
| Mature sequence | Cja-Mir-589_5p (predicted) |
| mirBase accession | None |
| Sequence |
0- UGAGAACCACGUCUGCUCUGAGC -23
Get sequence
|
| Star sequence | Cja-Mir-589_3p* (predicted) |
| mirBase accession | None |
| Sequence |
37- UCAGAACAAACACCGCUUCCCAGA -61
Get sequence
|
