| MirGeneDB ID | Pab-Mir-589 |
|---|---|
| Family name | MIR-589 (all species) |
| Seed | GAGAACC |
| Species | Sumatran orangutan (Pongo abelii) |
| MiRBase ID | |
| Paralogues | |
| Orthologues | Cja-Mir-589 Hsa-Mir-589 Mml-Mir-589 |
| Node of Origin (locus) | Primates |
| Node of Origin (family) | Primates |
| Genome context (GCA_028885655.2_NHGRI_mPonAbe1-v2.0_traces) |
CM054685.2: 5522608-5522668 [-] UCSC Ensembl |
| Precursor (pre-Mir +30nt flank) | GGCAAACUCCAGCCUGUGCUCAUCGGCCCCUGAGAACCACGUCUGCUCUGAGCUGGGUACUGCCUGUUCAGAACAAACGCUGGUUCCCAGACGCUGCCAGCUGGCCCCGUUCCUCUGGAUUGet precursor sequence |
| Structure | 10 20 30 40 50 GGCAAACUCCAGCCUGU---| CAU CC A - C C UGGGU GCU CGGC CUG GAACCA CGU UG UCUGAGC A CGA GUCG GAC CUUGGU GCA AC AGACUUG C UUAGGUCUCCUUGCCCCGGU^ CC- CA C C A A UCCGU . 110 100 90 80 70 60 |
| Deep sequencing | |
| Comment | Although absent in M. murinus this locus is present in other lemurs. |
| 3' NTU | Unknown |
| Motifs | UG at 5p(-14) |
| Mature sequence | Pab-Mir-589_5p (predicted) |
| mirBase accession | None |
| Sequence |
0- UGAGAACCACGUCUGCUCUGAGC -23
Get sequence
|
| Star sequence | Pab-Mir-589_3p* (predicted) |
| mirBase accession | None |
| Sequence |
37- UCAGAACAAACGCUGGUUCCCAGA -61
Get sequence
|
