| MirGeneDB ID | Cja-Mir-7180 |
|---|---|
| Family name | MIR-7180 (all species) |
| Seed | GGCCUCU |
| Species | White-tufted-ear marmoset (Callithrix jacchus) |
| MiRBase ID | |
| Paralogues | |
| Orthologues | Bta-Mir-7180 Cfa-Mir-7180 Dno-Mir-7180 Mml-Mir-7180 Ocu-Mir-7180 Pab-Mir-7180 |
| Node of Origin (locus) | Eutheria |
| Node of Origin (family) | Eutheria |
| Genome context (GCA_011100555.2_mCalJa1.2.pat.X_genomic) |
CM021933.1: 37485462-37485519 [-] UCSC Ensembl |
| Precursor (pre-Mir +30nt flank) | GAGGCUUUCUGAGGAUUGGUGGUUUCAGGGAGUGUACUUCCUGAGGCCUCUGGGUAUAAAAUUACUGUGGCCUCUGGGUGUGUACCCUCUGCGGCUUCCAGAUUCCUACAUCCUGCAGGet precursor sequence |
| Structure | 10 20 30 40 50 GAGGCUUUCUGAGGAUU--| U UU A U U UCUGGGUAU GG GGU CAGGG GUGUAC UCC GAGGCC A CC UCG GUCUC CAUGUG GGG CUCCGG A GACGUCCUACAUCCUUAGA^ U GC C U U UGUCAUUAA 110 100 90 80 70 60 |
| Deep sequencing | |
| 3' NTU | No |
| Motifs | UG at 5p(-14), CNNC at 3p(+17) |
| Star sequence | Cja-Mir-7180_5p* |
| mirBase accession | None |
| Sequence |
0- AGUGUACUUCCUGAGGCCUCU -21
Get sequence
|
| Mature sequence | Cja-Mir-7180_3p |
| mirBase accession | None |
| Sequence |
37- UGGCCUCUGGGUGUGUACCCU -58
Get sequence
|
