| MirGeneDB ID | Pab-Mir-7180 |
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| Family name |
MIR-7180 (all species) |
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| Seed |
GGCCUCU |
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| Species |
Sumatran orangutan (Pongo abelii) |
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| MiRBase ID |
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| Paralogues |
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| Orthologues |
Bta-Mir-7180
Cfa-Mir-7180
Cja-Mir-7180
Dno-Mir-7180
Mml-Mir-7180
Ocu-Mir-7180
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| Node of Origin (locus) |
Eutheria
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| Node of Origin (family) |
Eutheria
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Genome context
(GCA_028885655.2_NHGRI_mPonAbe1-v2.0_traces) |
CM054679.2: 4052995-4053052 [-]
UCSC
Ensembl
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Precursor
(pre-Mir +30nt flank) |
GAGGCUCUCUGAGGAUUGGUGGUUUCAGAGAGUGUACUUCCUGAGGCCUCUGGGUAUAAAAUUCCUGUGGCCUCUGGGUGUGUACCCUCUGUAGCUUCCAGAUUCAUACGUCCUGCAG
Get precursor sequence
|
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| Structure | 10 20 30 40 50
GAGGCUCUCUGAGGAUU--| U U A U U UCUGGGUAU
GG GGUU CAGAG GUGUAC UCC GAGGCC A
CC UCGA GUCUC CAUGUG GGG CUCCGG A
GACGUCCUGCAUACUUAGA^ U U C U U UGUCCUUAA
110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
Unknown
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| Motifs | UG at 5p(-14) |
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Tissue expression
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| Star sequence |
Pab-Mir-7180_5p* (predicted) |
| mirBase accession | None |
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| Sequence |
0- AGUGUACUUCCUGAGGCCUCU -21
Get sequence
|
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| Mature sequence |
Pab-Mir-7180_3p (predicted) |
| mirBase accession | None |
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| Sequence |
37- UGGCCUCUGGGUGUGUACCCU -58
Get sequence
|
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