| MirGeneDB ID | Pab-Mir-7180 |
|---|---|
| Family name | MIR-7180 (all species) |
| Seed | GGCCUCU |
| Species | Sumatran orangutan (Pongo abelii) |
| MiRBase ID | |
| Paralogues | |
| Orthologues | Bta-Mir-7180 Cfa-Mir-7180 Cja-Mir-7180 Dno-Mir-7180 Mml-Mir-7180 Ocu-Mir-7180 |
| Node of Origin (locus) | Eutheria |
| Node of Origin (family) | Eutheria |
| Genome context (GCA_028885655.2_NHGRI_mPonAbe1-v2.0_traces) |
CM054679.2: 4052995-4053052 [-] UCSC Ensembl |
| Precursor (pre-Mir +30nt flank) | GAGGCUCUCUGAGGAUUGGUGGUUUCAGAGAGUGUACUUCCUGAGGCCUCUGGGUAUAAAAUUCCUGUGGCCUCUGGGUGUGUACCCUCUGUAGCUUCCAGAUUCAUACGUCCUGCAGGet precursor sequence |
| Structure | 10 20 30 40 50 GAGGCUCUCUGAGGAUU--| U U A U U UCUGGGUAU GG GGUU CAGAG GUGUAC UCC GAGGCC A CC UCGA GUCUC CAUGUG GGG CUCCGG A GACGUCCUGCAUACUUAGA^ U U C U U UGUCCUUAA 110 100 90 80 70 60 |
| Deep sequencing | |
| 3' NTU | Unknown |
| Motifs | UG at 5p(-14) |
| Star sequence | Pab-Mir-7180_5p* (predicted) |
| mirBase accession | None |
| Sequence |
0- AGUGUACUUCCUGAGGCCUCU -21
Get sequence
|
| Mature sequence | Pab-Mir-7180_3p (predicted) |
| mirBase accession | None |
| Sequence |
37- UGGCCUCUGGGUGUGUACCCU -58
Get sequence
|
