| MirGeneDB ID | Ocu-Mir-7180 |
|---|
| Family name |
MIR-7180 (all species) |
|---|
| Seed |
GUGGCCU |
|---|
| Species |
Rabbit (Oryctolagus cuniculus) |
|---|
| MiRBase ID |
ocu-mir-7180
|
|---|
| Paralogues |
|
|---|
| Orthologues |
Bta-Mir-7180
Cfa-Mir-7180
Dno-Mir-7180
Mml-Mir-7180
|
|---|
| Node of Origin (locus) |
Eutheria
|
|---|
| Node of Origin (family) |
Eutheria
|
|---|
Genome context
(oryCun2_add) |
chr16: 22502775-22502832 [-]
UCSC
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
GAGGCUGUCUGAGGACUGGUGGUCUCAGGGAGUGUACUUCCUGGGGCCUCUGGGUAUAUAAUUCCUGUGGCCUCUGGGUGUGUACCCUCUGUGGCUUCCAAGGUCAUACUUCCUGCAG
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
GAGGCUGUCUGAGGACU--| U U A U U UCU GUAU
GG GGUC CAGGG GUGUAC UCC GGGGCC GG A
CC UCGG GUCUC CAUGUG GGG CUCCGG CC U
GACGUCCUUCAUACUGGAA^ U U C U U UGU UUAA
110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
Yes
|
|---|
| Motifs | UG at 5p(-14) |
|---|
Tissue expression
|
|
|---|
| Star sequence |
Ocu-Mir-7180_5p* |
| mirBase accession | MIMAT0048615 |
|---|
| Sequence |
0- AGUGUACUUCCUGGGGCCUCUGG -23
Get sequence
|
|---|
| Mature sequence |
Ocu-Mir-7180_3p |
| mirBase accession | MIMAT0048616 |
|---|
| Sequence |
35- UGUGGCCUCUGGGUGUGUACCCU -58
Get sequence
|
|---|
