MirGeneDB 3.0
MirGeneDB ID

Cja-Mir-887

Family name MIR-887 (all species)
Seed UGAACGG
Species White-tufted-ear marmoset (Callithrix jacchus)
MiRBase ID
Paralogues
Orthologues Hsa-Mir-887  Mml-Mir-887  Pab-Mir-887 
Node of Origin (locus) Simiiformes
Node of Origin (family) Simiiformes
Genome context
(GCA_011100555.2_mCalJa1.2.pat.X_genomic)		 CM021916.1: 186031565-186031629 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UGACAUCAUCAGAGAGCCCUGGGGUGCAGAACCUUGGGAGCCCUGUUAGACUCUGGAUUUUAAACUUGGAGUGAACGGGCGCCAUCCCGAGGCUUUGCAUAGGGGCAUGCUUCGAAUUCCAUUUU
Get precursor sequence
Structure
        10           20        30          40         50        60 
UGACAUCAUCAGAGAGC---   GGG       A        --  -|     AG    UGGAUUU 
                    CCU   GUGCAGA CCUUGGGA  GC CCUGUU  ACUC       \
                    GGG   UACGUUU GGAGCCCU  CG GGGCAA  UGAG       U
UUUUACCUUAAGCUUCGUAC   GA-       C        AC  C^     G-    GUUCAAA 
   120       110        100        90        80         70
Deep sequencing
Go to detailed chart
3' NTU Unknown
MotifsNo
Tissue expression
-   +
To
Star sequence

Cja-Mir-887_5p* (predicted)
mirBase accessionNone
Sequence 
0- ACCUUGGGAGCCCUGUUAGACUC -23
Get sequence
Mature sequence

Cja-Mir-887_3p (predicted)
mirBase accessionNone
Sequence 
40- GUGAACGGGCGCCAUCCCGAGGCUU -65
Get sequence