| MirGeneDB ID | Pab-Mir-887 |
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| Family name |
MIR-887 (all species) |
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| Seed |
UGAACGG |
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| Species |
Sumatran orangutan (Pongo abelii) |
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| MiRBase ID |
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| Paralogues |
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| Orthologues |
Cja-Mir-887
Hsa-Mir-887
Mml-Mir-887
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| Node of Origin (locus) |
Simiiformes
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| Node of Origin (family) |
Simiiformes
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Genome context
(GCA_028885655.2_NHGRI_mPonAbe1-v2.0_traces) |
CM054683.2: 16342111-16342175 [+]
UCSC
Ensembl
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Precursor
(pre-Mir +30nt flank) |
AGAUGCCGUCAGAGAACCCCGGGGUGCAGAUCCUUGGGAGCCCUGUUAGACUCUGGAUUUUACACUUGGAGUGAACGGGCGCCAUCCCGAGGCUUUGCACAGGGGCAAGCUUCGAGUUUCGUUUU
Get precursor sequence
|
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| Structure | 10 20 30 40 50 60
AGAUGCCGUCAGAGAAC--- GGG U -- -| AG UGGAUUU
CCC GUGCAGA CCUUGGGA GC CCUGUU ACUC \
GGG CACGUUU GGAGCCCU CG GGGCAA UGAG U
UUUUGCUUUGAGCUUCGAAC GA- C AC C^ G- GUUCACA
120 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
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| 3' NTU |
Unknown
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| Motifs | No |
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Tissue expression
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| Star sequence |
Pab-Mir-887_5p* (predicted) |
| mirBase accession | None |
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| Sequence |
0- UCCUUGGGAGCCCUGUUAGACUC -23
Get sequence
|
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| Mature sequence |
Pab-Mir-887_3p |
| mirBase accession | None |
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| Sequence |
40- GUGAACGGGCGCCAUCCCGAGGCUU -65
Get sequence
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