| MirGeneDB ID | Pab-Mir-887 |
|---|---|
| Family name | MIR-887 (all species) |
| Seed | UGAACGG |
| Species | Sumatran orangutan (Pongo abelii) |
| MiRBase ID | |
| Paralogues | |
| Orthologues | Cja-Mir-887 Hsa-Mir-887 Mml-Mir-887 |
| Node of Origin (locus) | Simiiformes |
| Node of Origin (family) | Simiiformes |
| Genome context (GCA_028885655.2_NHGRI_mPonAbe1-v2.0_traces) |
CM054683.2: 16342111-16342175 [+] UCSC Ensembl |
| Precursor (pre-Mir +30nt flank) | AGAUGCCGUCAGAGAACCCCGGGGUGCAGAUCCUUGGGAGCCCUGUUAGACUCUGGAUUUUACACUUGGAGUGAACGGGCGCCAUCCCGAGGCUUUGCACAGGGGCAAGCUUCGAGUUUCGUUUUGet precursor sequence |
| Structure | 10 20 30 40 50 60 AGAUGCCGUCAGAGAAC--- GGG U -- -| AG UGGAUUU CCC GUGCAGA CCUUGGGA GC CCUGUU ACUC \ GGG CACGUUU GGAGCCCU CG GGGCAA UGAG U UUUUGCUUUGAGCUUCGAAC GA- C AC C^ G- GUUCACA 120 110 100 90 80 70 |
| Deep sequencing | |
| 3' NTU | Unknown |
| Motifs | No |
| Star sequence | Pab-Mir-887_5p* (predicted) |
| mirBase accession | None |
| Sequence |
0- UCCUUGGGAGCCCUGUUAGACUC -23
Get sequence
|
| Mature sequence | Pab-Mir-887_3p |
| mirBase accession | None |
| Sequence |
40- GUGAACGGGCGCCAUCCCGAGGCUU -65
Get sequence
|
