MirGeneDB 2.1

MirGeneDB ID

Cli-Mir-1641

Family name MIR-1641 (all species)
Seed GAGGAUU
Species Rock pigeon (Columba livia)
MiRBase ID cli-mir-1641
Paralogues
Orthologues Ami-Mir-1641  Gga-Mir-1641  Tgu-Mir-1641 
Node of Origin (locus) Archosauria
Node of Origin (family) Archosauria
Genome context
(colLiv2)
scaffold490: 1454677-1454735 [-]
Precursor
(pre-Mir +30nt flank)
GCAAUAACAGCCUCGAUGCAGGGCAUUUCCUGAGGAUUAAUGACUGUCUGGGGUCAUCAUCUCCUCCCAGUUAGUUAUUAAUCCCCAGGAAAUACUCUGUGCCUUGAUCAUUAUUGCUU
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Structure
        10          20        30        40        50         
GCAAUAACAGCCUCGAU--|     C        A             U     GUCAUC 
                   GCAGGG AUUUCCUG GGAUUAAUGACUG CUGGG      \
                   UGUCUC UAAAGGAC CCUAAUUAUUGAU GACCC      A
UUCGUUAUUACUAGUUCCG^     A        C             U     UCCUCU 
       110       100        90        80        70        60
Deep sequencing
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3' NTU Unknown
MotifsUG at 5p(-14)
Tissue expression
 +
Cl Cl Cl Cl Cl To
Mature sequence

Cli-Mir-1641_5p

mirBase accessionMIMAT0038687
Sequence
0- UGAGGAUUAAUGACUGUCUGGG -22
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Star sequence

Cli-Mir-1641_3p* (predicted)

mirBase accessionNone
Sequence
37- CAGUUAGUUAUUAAUCCCCAGG -59
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