MirGeneDB 3.0

MirGeneDB ID

Cli-Mir-1729

Family name MIR-1729 (all species)
Seed UCCCUUA
Species Rock pigeon (Columba livia)
MiRBase ID cli-mir-1729
Paralogues
Orthologues Gga-Mir-1729  Tgu-Mir-1729 
Node of Origin (locus) Neognathae
Node of Origin (family) Neognathae
Genome context
(colLiv2)
scaffold20: 27908-27969 [+]
Precursor
(pre-Mir +30nt flank)
AGCCUCUUUGGUAGACAGGCCUGAUCCUGCAUCCCUUACUCACGUGAGCAGUCGUCUCUAUUUCACGGGACUACUCGGUGAGUAAGGAUCGCAGGACUGGGACCACUACCUGUAACUUUAAA
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Structure
        10          20        30         40        50        60 
AGCCUCUUUGGUAGACA-  -   GA      -|   C        G    C    GUCUCUA 
                  GG CCU  UCCUGC AUCC UUACUCAC UGAG AGUC       \
                  CC GGG  AGGACG UAGG AAUGAGUG GCUC UCAG       U
AAAUUUCAAUGUCCAUCA  A   UC      C^   -        -    A    GGCACUU 
120       110       100        90         80         70
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
 +
Li Mi Ov Pe Te To
Mature sequence

Cli-Mir-1729_5p

mirBase accessionMIMAT0038695
Sequence
0- AUCCCUUACUCACGUGAGCAGUC -23
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Co-mature sequence

Cli-Mir-1729_3p

mirBase accessionMIMAT0038696
Sequence
40- CUACUCGGUGAGUAAGGAUCGC -62
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