MirGeneDB ID | Cli-Mir-1729 |
Family name |
MIR-1729 (all species) |
Seed |
UCCCUUA |
Species |
Rock pigeon (Columba livia) |
MiRBase ID |
cli-mir-1729
|
Paralogues |
|
Orthologues |
Gga-Mir-1729
Tgu-Mir-1729
|
Node of Origin (locus) |
Neognathae
|
Node of Origin (family) |
Neognathae
|
Genome context (colLiv2) |
scaffold20: 27908-27969 [+]
|
Precursor (pre-Mir +30nt flank) |
AGCCUCUUUGGUAGACAGGCCUGAUCCUGCAUCCCUUACUCACGUGAGCAGUCGUCUCUAUUUCACGGGACUACUCGGUGAGUAAGGAUCGCAGGACUGGGACCACUACCUGUAACUUUAAA
Get precursor sequence
|
Structure | 10 20 30 40 50 60
AGCCUCUUUGGUAGACA- - GA -| C G C GUCUCUA
GG CCU UCCUGC AUCC UUACUCAC UGAG AGUC \
CC GGG AGGACG UAGG AAUGAGUG GCUC UCAG U
AAAUUUCAAUGUCCAUCA A UC C^ - - A GGCACUU
120 110 100 90 80 70 |
Deep sequencing |
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|
3' NTU |
No
|
Motifs | No |
Tissue expression
|
|
Mature sequence |
Cli-Mir-1729_5p |
mirBase accession | MIMAT0038695 |
Sequence |
0- AUCCCUUACUCACGUGAGCAGUC -23
Get sequence
|
Co-mature sequence |
Cli-Mir-1729_3p |
mirBase accession | MIMAT0038696 |
Sequence |
40- CUACUCGGUGAGUAAGGAUCGC -62
Get sequence
|