MirGeneDB 3.0

MirGeneDB ID

Cpi-Mir-727-v2

Family name MIR-727 (all species)
Seed UUGAGGC
Species Western painted turtle (Chrysemys picta bellii)
MiRBase ID cpi-mir-727
Paralogues Cpi-Mir-727-v1 
Orthologues Aca-Mir-727-v2  Spt-Mir-727 
Node of Origin (locus) Osteichthyes
Node of Origin (family) Osteichthyes
Genome context
(chrPic1)
JH584458: 2755678-2755737 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-727-v2)
Mir-727-v1 JH584458: 2755676-2755739 [-] UCSC Ensembl
Mir-727-v2 JH584458: 2755678-2755737 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UGAAAUUUGAUUGCCCUGUAUGUCAUUUUCAGUCUUCAAUUCCUCCCAGCCCAUUAAAUGGAAACUGAGUUGAGGCGAGUUGAAGACUAAAAAUGCUGUGCAGAAUCAAGGUAAUGUUUC
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Structure
        10          20        30        40         50         
UGAAAUUUGAUUGCCCU--|    U      C            CU  -    C AUUAAA 
                   GUAUG CAUUUU AGUCUUCAAUUC  CC CAGC C      U
                   CGUGU GUAAAA UCAGAAGUUGAG  GG GUUG G      G
CUUUGUAAUGGAACUAAGA^    C      A            C-  A    A UCAAAG 
.       110       100        90        80         70        60
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14)
Tissue expression
 +
Te Te Te To
Star sequence

Cpi-Mir-727-v2_5p*

mirBase accessionNone
Sequence
0- AGUCUUCAAUUCCUCCCAGCCC -22
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Mature sequence

Cpi-Mir-727-v2_3p

mirBase accessionMIMAT0037998
Sequence
38- GUUGAGGCGAGUUGAAGACUAA -60
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