MirGeneDB 3.0
MirGeneDB ID

Cpi-Mir-727-v1

Family name MIR-727 (all species)
Seed GAGGCGA
Species Western painted turtle (Chrysemys picta bellii)
MiRBase ID cpi-mir-727
Paralogues Cpi-Mir-727-v2 
Orthologues Aca-Mir-727-v1  Spt-Mir-727 
Node of Origin (locus) Osteichthyes
Node of Origin (family) Osteichthyes
Genome context
(chrPic1)		 JH584458: 2755676-2755739 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-727-v1)		 Mir-727-v1 JH584458: 2755676-2755739 [-] UCSC Ensembl
Mir-727-v2 JH584458: 2755678-2755737 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AGUGAAAUUUGAUUGCCCUGUAUGUCAUUUUCAGUCUUCAAUUCCUCCCAGCCCAUUAAAUGGAAACUGAGUUGAGGCGAGUUGAAGACUAAAAAUGCUGUGCAGAAUCAAGGUAAUGUUUCCU
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Structure
        10          20        30        40         50        60 
AGUGAAAUUUGAUUGCC--|      U      C            CU  -    CCAUUAAA 
                   CUGUAUG CAUUUU AGUCUUCAAUUC  CC CAGC        U
                   GACGUGU GUAAAA UCAGAAGUUGAG  GG GUUG        G
UCCUUUGUAAUGGAACUAA^      C      A            C-  A    AGUCAAAG 
  120       110       100        90        80         70
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
-   +
Te Te Te To
Star sequence

Cpi-Mir-727-v1_5p*
mirBase accessionNone
Sequence 
0- UCAGUCUUCAAUUCCUCCCAGC -22
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Mature sequence

Cpi-Mir-727-v1_3p
mirBase accessionMIMAT0037998
Sequence 
42- UGAGGCGAGUUGAAGACUAAAA -64
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