MirGeneDB 3.0
MirGeneDB ID

Csc-Mir-34-P20

Family name MIR-34 (all species)
Seed GGCAGUG
Species Arizona bark scorpion (Centruroides sculpturatus)
MiRBase ID
Paralogues Csc-Mir-34-P19a  Csc-Mir-34-P19b  Csc-Mir-34-P19c 
Orthologues Aae-Mir-34  Aga-Mir-34  Agr-Mir-34  Asu-Mir-34  Bge-Mir-34  Cbr-Mir-34  Cel-Mir-34  Cin-Mir-34  Cte-Mir-34  Dan-Mir-34  Dlo-Mir-34  Dma-Mir-34  Dme-Mir-34  Dmo-Mir-34  Dpu-Mir-34  Dsi-Mir-34  Dya-Mir-34  Efe-Mir-34  Esc-Mir-34  Gpa-Mir-34  Gsp-Mir-34  Hmi-Mir-34  Hru-Mir-34  Isc-Mir-34  Lgi-Mir-34  Lhy-Mir-34  Llo-Mir-34  Mgi-Mir-34  Mom-Mir-34  Npo-Mir-34  Obi-Mir-34  Ofu-Mir-34  Ovu-Mir-34  Pau-Mir-34  Pca-Mir-34  Pdu-Mir-34  Pfl-Mir-34  Pmi-Mir-34  Pve-Mir-34  Rph-Mir-34  Sko-Mir-34  Snu-Mir-34  Spu-Mir-34  Tca-Mir-34  Tur-Mir-34  War-Mir-34 
Node of Origin (locus) C. sculpturatus
Node of Origin (family) Bilateria
Genome context
(GCF_000671375.1_CSC)		 NW_019384537.1: 174434-174492 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
UAUCUUCCUCGGAAUGUCUGCAUCAGUGUUUGGCAGUGUGGUUAGCUGGUUGUUAAAUGAAAACAACAACCACUAUCUACAUUGCCGGAAACUGGUGAUGAACGCUUCUUCGAAAGGAA
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Structure
        10        20          30        40        50         
UAUCUUCCUCGGAAUGUCUG--|      G             U   C       UAAAU 
                      CAUCAGU UUUGGCAGUGUGG UAG UGGUUGU     G
                      GUGGUCA AGGCCGUUACAUC AUC ACCAACA     A
AAGGAAAGCUUCUUCGCAAGUA^      A             U   -       ACAAA 
       110       100        90        80         70        60
Deep sequencing
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CommentThere is a second Dicer cut +1 on the 3p arm.
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Fe Fe Fe Fe Ma Ma Ma
Mature sequence

Csc-Mir-34-P20_5p
mirBase accessionNone
Sequence 
0- UGGCAGUGUGGUUAGCUGGUUGU -23
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Star sequence

Csc-Mir-34-P20_3p*
mirBase accessionNone
Sequence 
37- AACCACUAUCUACAUUGCCGGA -59
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