MirGeneDB ID | Dan-Mir-1003 |
Family name |
MIR-1003 (all species) |
Seed |
CUCACAU |
Species |
Fruit fly (Drosophila ananassae) |
MiRBase ID |
|
Paralogues |
|
Orthologues |
Dme-Mir-1003
Dmo-Mir-1003
Dsi-Mir-1003
Dya-Mir-1003
|
Node of Origin (locus) |
Drosophila
|
Node of Origin (family) |
Drosophila
|
Genome context (Dana_caf1) |
scaffold_13340: 4690341-4690403 [-]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
GCGCGAACUGGCGCUCAAGCUACGCCGAAGGUGAGUAUAGUGGAUGUGGGUGGCUCUUAUUUGGCCGGUCCUCUCACAUCUCCAUAUUCACAGGCGUCGAGAGCUGCGCCACAAGUAUGGUAC
Get precursor sequence
|
Structure | 10 20 30 40 50 60
GCGCGAACUGGCGCUCA- ----| GAAG AGU U CUCUUAU
AGCU ACGCC GUGAGUAU GGAUGUGGG GG U
UCGA UGCGG CACUUAUA UCUACACUC CC U
CAUGGUAUGAACACCGCG GAGC^ A--- CC- U UGGCCGG
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Star sequence |
Dan-Mir-1003_5p* |
mirBase accession | None |
Sequence |
0- GUGAGUAUAGUGGAUGUGGGUGG -23
Get sequence
|
Mature sequence |
Dan-Mir-1003_3p |
mirBase accession | None |
Sequence |
41- UCUCACAUCUCCAUAUUCACAG -63
Get sequence
|