| MirGeneDB ID | Dmo-Mir-1003 |
|---|
| Family name |
MIR-1003 (all species) |
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| Seed |
UGAGUAA |
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| Species |
Fruit fly (Drosophila mojavensis) |
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| MiRBase ID |
|
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| Paralogues |
|
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| Orthologues |
Dan-Mir-1003
Dme-Mir-1003
Dsi-Mir-1003
Dya-Mir-1003
|
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| Node of Origin (locus) |
Drosophila
|
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| Node of Origin (family) |
Drosophila
|
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Genome context
(Dmoj_caf1) |
scaffold_6540: 4775683-4775740 [+]
Ensembl
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Precursor
(pre-Mir +30nt flank) |
GCGCGAGCUGGCGCUCAAGCUGCGGCGCAGGUGAGUAAUCAGUUGUGGGUGGCUCUAGUGAAGCCCUCUCACAUCUCUUUAUUCACAGGCGGCGAGAGUUGCGCCACAAGUACGGCAC
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
GCGCGAGCUGGCGCUCA- G- G AG UC U U-| CUCUA
AGCU CG CGC GUGAGUAA AG UGUGGG GG \
UUGA GC GCG CACUUAUU UC ACACUC CC G
CACGGCAUGAACACCGCG GA G GA UC U UC^ GAAGU
110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
|
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
|
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| Mature sequence |
Dmo-Mir-1003_5p |
| mirBase accession | None |
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| Sequence |
0- GUGAGUAAUCAGUUGUGGGUGG -22
Get sequence
|
|---|
| Co-mature sequence |
Dmo-Mir-1003_3p |
| mirBase accession | None |
|---|
| Sequence |
36- UCUCACAUCUCUUUAUUCACAG -58
Get sequence
|
|---|
