MirGeneDB 3.0

MirGeneDB ID

Dme-Mir-1001

Family name MIR-1001 (all species)
Seed GGGUAAA
Species Fruit fly (Drosophila melanogaster)
MiRBase ID dme-mir-1001
Paralogues
Orthologues Dsi-Mir-1001  Dya-Mir-1001 
Node of Origin (locus) D. melanogaster subgroup
Node of Origin (family) D. melanogaster subgroup
Genome context
(Drosophila_melanogaster_BDGP6)
3R: 27642480-27642540 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AGCCCGCGAUGAUGUAAGCUGGCCUGUCCCUGGGUAAACUCCCAAGGAUCAGGUGGAGAUUGAAUCCCGAUCCUUGGGUUUCUGCUCUCGGGCAAGGUCAGUAGUGCCCGCGAAGGGCCCA
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Structure
        10          20         30        40        50         
AGCCCGCGAUGAUGUAA--       -|    CU     AACU          AGGUGGAG 
                   GCUGGCC UGUCC  GGGUA    CCCAAGGAUC        A
                   UGACUGG ACGGG  CUCGU    GGGUUCCUAG        U
ACCCGGGAAGCGCCCGUGA       A^    CU     CUUU          CCCUAAGU 
 .       110       100        90        80        70        60
Deep sequencing
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CommentThere is a second Dicer cut +2 on both arms.
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Bo He He La Ov Sa Wh
Mature sequence

Dme-Mir-1001_5p

mirBase accessionMIMAT0005521
Sequence
0- UGGGUAAACUCCCAAGGAUCA -21
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Proposed targets microrna.org: MIMAT0005521
TargetScanFly: dme-miR-1001
Star sequence

Dme-Mir-1001_3p*

mirBase accessionMIMAT0020901
Sequence
39- AUCCUUGGGUUUCUGCUCUCGG -61
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