| MirGeneDB ID | Dya-Mir-1001 |
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| Family name |
MIR-1001 (all species) |
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| Seed |
GGGUAAA |
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| Species |
Fruit fly (Drosophila yakuba) |
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| MiRBase ID |
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| Paralogues |
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| Orthologues |
Dme-Mir-1001
Dsi-Mir-1001
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| Node of Origin (locus) |
D. melanogaster subgroup
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| Node of Origin (family) |
D. melanogaster subgroup
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Genome context
(Drosophila_yakuba.dyak_caf1.dna.toplevel) |
3R: 23018709-23018769 [+]
UCSC
Ensembl
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Precursor
(pre-Mir +30nt flank) |
GUGUAUAGAUGAUGUAAACUGGCCUGUCCCUGGGUAAACUCCCAAUGAUCCGGUGUACAUUGAAUUCGGAUCCUUGGGUUUGAGCCCAAGGACAAGGACAGUAGUGCCCGCGAAGGGCCCA
Get precursor sequence
|
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| Structure | 10 20 30 40 50
GUGUAUAGAUGAUGUAA-- G -| C AAACU U GUGUAC
ACUG CC UGUCC UGGGU CCCAA GAUCCG A
UGAC GG ACAGG ACCCG GGGUU CUAGGC U
ACCCGGGAAGCGCCCGUGA A A^ A AGUUU C UUAAGU
. 110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
Unknown
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| Motifs | CNNC at 3p(+17), UGUG in loop |
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Tissue expression
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| Mature sequence |
Dya-Mir-1001_5p |
| mirBase accession | None |
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| Sequence |
0- UGGGUAAACUCCCAAUGAUCCG -22
Get sequence
|
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| Star sequence |
Dya-Mir-1001_3p* (predicted) |
| mirBase accession | None |
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| Sequence |
39- AUCCUUGGGUUUGAGCCCAAGG -61
Get sequence
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