MirGeneDB ID | Dsi-Mir-1001 |
Family name |
MIR-1001 (all species) |
Seed |
GGGUAAA |
Species |
Fruit fly (Drosophila simulans) |
MiRBase ID |
dsi-mir-1001
|
Paralogues |
|
Orthologues |
Dme-Mir-1001
Dya-Mir-1001
|
Node of Origin (locus) |
D. melanogaster subgroup
|
Node of Origin (family) |
D. melanogaster subgroup
|
Genome context (Drosophila_simulans.ASM75419v3.dna.toplevel) |
3R: 22893132-22893192 [-]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
AGCCCGCGAUGAUGUAAGCUGGCCUGUCCCUGGGUAAACUCCCAAGGAUCAGGUGGAGAUUGAAUCCCGAUCCUUGGGUUUCUGCUCUCGGGCAAGGUCAGCAGUGCCCGCGAAGGGCCCA
Get precursor sequence
|
Structure | 10 20 30 40 50
AGCCCGCGAUGAUGUAA-- -| CU AACU AGGUGGAG
GCUGGCC UGUCC GGGUA CCCAAGGAUC A
CGACUGG ACGGG CUCGU GGGUUCCUAG U
ACCCGGGAAGCGCCCGUGA A^ CU CUUU CCCUAAGU
. 110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Mature sequence |
Dsi-Mir-1001_5p |
mirBase accession | MIMAT0012506 |
Sequence |
0- UGGGUAAACUCCCAAGGAUCA -21
Get sequence
|
Star sequence |
Dsi-Mir-1001_3p* |
mirBase accession | MIMAT0012507 |
Sequence |
39- AUCCUUGGGUUUCUGCUCUCGG -61
Get sequence
|