MirGeneDB ID | Dmo-Mir-975 |
Family name |
MIR-975 (all species) |
Seed |
CAAGAUG |
Species |
Fruit fly (Drosophila mojavensis) |
MiRBase ID |
|
Paralogues |
|
Orthologues |
Dan-Mir-975
Dme-Mir-975
Dsi-Mir-975
Dya-Mir-975
|
Node of Origin (locus) |
Drosophila
|
Node of Origin (family) |
Drosophila
|
Genome context (Dmoj_caf1) |
scaffold_6328: 2901150-2901214 [-]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
AAUGCCAGCAUUUCAUAUGGUCUUUGAUUGUAGAUACUCCCUAUAUCCCGUAUGUGCGAUACUUUGAUAAAAUACAAGAUGUAUGGGGUGUCUGCAAUCACAAACCACAUAGCCGCAAUCAAACA
Get precursor sequence
|
Structure | 10 20 30 40 50 60
AAUGCCAGCAUUUCAUA-| CUU C CC GUGCGAUA
UGGU UGAUUGUAGAUACUCC UAUAUC GUAU C
ACCA ACUAACGUCUGUGGGG AUGUAG CAUA U
ACAAACUAACGCCGAUAC^ AAC U AA AAAUAGUU
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17), UGUG in loop |
Tissue expression
|
|
Star sequence |
Dmo-Mir-975_5p* |
mirBase accession | None |
Sequence |
0- UAGAUACUCCCUAUAUCCCGUAU -23
Get sequence
|
Mature sequence |
Dmo-Mir-975_3p |
mirBase accession | None |
Sequence |
43- ACAAGAUGUAUGGGGUGUCUGC -65
Get sequence
|