Mir-975

MirGeneDB ID

Dsi-Mir-975

Family name

MIR-975 (all species)

Seed

AAACACU

Species

Fruit fly (Drosophila simulans)

MiRBase ID

dsi-mir-975

Paralogues

Orthologues

Dan-Mir-975 Dme-Mir-975 Dmo-Mir-975 Dya-Mir-975

Node of Origin (locus)

Drosophila

Node of Origin (family)

Drosophila

Genome context
(Drosophila_simulans.ASM75419v3.dna.toplevel)

X: 18330806-18330866 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-975)

Mir-972 X: 18322964-18323019 [+] UCSC Ensembl
Mir-9369 X: 18323144-18323204 [+] UCSC Ensembl
Mir-973 X: 18323323-18323387 [+] UCSC Ensembl
Mir-974 X: 18323461-18323522 [+] UCSC Ensembl
Mir-975 X: 18330806-18330866 [+] UCSC Ensembl
Mir-976 X: 18330933-18330991 [+] UCSC Ensembl
Mir-977 X: 18331071-18331133 [+] UCSC Ensembl
Mir-978-v1 X: 18333231-18333293 [+] UCSC Ensembl
Mir-978-v2 X: 18333232-18333292 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

CUCGGAAGUGCAAUAUUGAGUUUUUGAUUUUAAACACUGCCUACAUCCUGUAUGUGUUUUGCAUCCGAUACAGUUGUAGGAGUCGUUUGCAGUCAGAGAUUUCACAGACUGCGAGGAUCGA

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Structure

        10          20        30         40        50        60
CUCGGAAGUGCAAUAUU--            U     -|  G      UC      GUGUUU 
                   GAGUUUUUGAUU UAAAC ACU CCUACA  CUGUAU      U
                   UUUAGAGACUGA GUUUG UGA GGAUGU  GACAUA      G
AGCUAGGAGCGUCAGACAC            C     C^  -      U-      GCCUAC 
 .       110       100        90         80         70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17), UGUG in loop

Tissue expression

He	Wh

Mature sequence

Dsi-Mir-975_5p

mirBase accession

MIMAT0012501

Sequence

0- UAAACACUGCCUACAUCCUGUAU -23

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Star sequence

Dsi-Mir-975_3p*

mirBase accession

MIMAT0037356

Sequence

39- ACAGUUGUAGGAGUCGUUUGCA -61

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