Mir-978-v1

MirGeneDB ID

Dsi-Mir-978-v1

Family name

MIR-978 (all species)

Seed

GUCCAGU

Species

Fruit fly (Drosophila simulans)

MiRBase ID

dsi-mir-978a

Paralogues

Dsi-Mir-978-v2

Orthologues

Dan-Mir-978-v1 Dme-Mir-978-v1 Dya-Mir-978

Node of Origin (locus)

D. melanogaster group

Node of Origin (family)

D. melanogaster group

Genome context
(Drosophila_simulans.ASM75419v3.dna.toplevel)

X: 18333231-18333293 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-978-v1)

Mir-972 X: 18322964-18323019 [+] UCSC Ensembl
Mir-9369 X: 18323144-18323204 [+] UCSC Ensembl
Mir-973 X: 18323323-18323387 [+] UCSC Ensembl
Mir-974 X: 18323461-18323522 [+] UCSC Ensembl
Mir-975 X: 18330806-18330866 [+] UCSC Ensembl
Mir-976 X: 18330933-18330991 [+] UCSC Ensembl
Mir-977 X: 18331071-18331133 [+] UCSC Ensembl
Mir-978-v1 X: 18333231-18333293 [+] UCSC Ensembl
Mir-978-v2 X: 18333232-18333292 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

UUGAGGACGAAGUAGAUUGGCGGCACAAUCUGCAAUCUACGCCACUGGCUUACGUUGUGGUCGAGAAUCGUGUCCAGUGCCGUAUAUUGCAGUUGUGUGGACGCAAACGGCAGCAGCGAAGGA

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Structure

        10        20           30        40        50        60 
UUGAGGACGAAGUAGAUUG   ---|     U       C    C      CU    UUGUGG 
                   GCG   GCACAA CUGCAAU UACG CACUGG  UACG      U
                   CGC   UGUGUU GACGUUA AUGC GUGACC  GUGC      C
AGGAAGCGACGACGGCAAA   AGG^     -       U    C      U-    UAAGAG 
 120       110       100         90        80         70

Deep sequencing

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3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

He	Wh

Star sequence

Dsi-Mir-978-v1_5p*

mirBase accession

MIMAT0037355

Sequence

0- UGCAAUCUACGCCACUGGCUUACG -24

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Mature sequence

Dsi-Mir-978-v1_3p

mirBase accession

MIMAT0012424

Sequence

40- UGUCCAGUGCCGUAUAUUGCAGU -63

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