Mir-978

MirGeneDB ID

Dya-Mir-978

Family name

MIR-978 (all species)

Seed

UGUCCAG

Species

Fruit fly (Drosophila yakuba)

MiRBase ID

dya-mir-978

Paralogues

Orthologues

Dan-Mir-978-v1 Dan-Mir-978-v2 Dme-Mir-978-v1 Dme-Mir-978-v2 Dsi-Mir-978-v1 Dsi-Mir-978-v2

Node of Origin (locus)

D. melanogaster group

Node of Origin (family)

D. melanogaster group

Genome context
(Drosophila_yakuba.dyak_caf1.dna.toplevel)

X: 11883774-11883834 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-978)

Mir-978 X: 11883774-11883834 [-] UCSC Ensembl
Mir-977 X: 11885660-11885723 [-] UCSC Ensembl
Mir-976 X: 11885829-11885886 [-] UCSC Ensembl
Mir-975 X: 11885984-11886046 [-] UCSC Ensembl
Mir-9690 X: 11886163-11886224 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

CGAAGUGCAUCCAGGUGGGCGGCACAGCCAGCACUCUACGCCGCUGGCUUACGUUGUACUCGGAAAUCGUGUCCAGUGCCGUUGAUUGCAGUUGUGUGGACGCAAAGGGCAGCGGAGAACA

Get precursor sequence

Structure

        10        20           30        40        50        60
CGAAGUGCAUCCAGGUGG   ---|      CA   C  U   C      CU    UUGUAC 
                  GCG   GCACAGC  GCA UC ACG CGCUGG  UACG      U
                  CGC   UGUGUUG  CGU AG UGC GUGACC  GUGC      C
ACAAGAGGCGACGGGAAA   AGG^      A-   U  U   C      U-    UAAAGG 
 .       110       100        90         80         70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UGUG in loop

Tissue expression

He	Wh

Star sequence

Dya-Mir-978_5p* (predicted)

mirBase accession

MIMAT0039179

Sequence

0- GCACUCUACGCCGCUGGCUUACGU -24

Get sequence

Mature sequence

Dya-Mir-978_3p

mirBase accession

MIMAT0039180

Sequence

38- GUGUCCAGUGCCGUUGAUUGCAG -61

Get sequence