MirGeneDB ID | Dan-Mir-978-v2 |
Family name |
MIR-978 (all species) |
Seed |
UGUCCAG |
Species |
Fruit fly (Drosophila ananassae) |
MiRBase ID |
|
Paralogues |
Dan-Mir-978-v1
|
Orthologues |
Dme-Mir-978-v2
Dsi-Mir-978-v2
Dya-Mir-978
|
Node of Origin (locus) |
D. melanogaster group
|
Node of Origin (family) |
D. melanogaster group
|
Genome context (Dana_caf1) |
scaffold_13417: 2460541-2460600 [-]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
CGGACAGGGCAAGCUCGGCGGCACAGACAGCAUUCGACGCUGCUGGCUUACGUGGUGGUUGAUAUCCGUGUCCAGUGACGUUGAUUGCAGUUGUGUAGACGCGAAUUACAGCGACCGAUA
Get precursor sequence
|
Structure | 10 20 30 40 50
CGGACAGGGCAAGCUCG- ---| ACA U CU CU U UGGU
GCG GCACAG GCA UCGACG GCUGG UACG GG \
CGC UGUGUU CGU AGUUGC UGACC GUGC CU U
AUAGCCAGCGACAUUAAG AGA^ GA- U AG U- - AUAG
. 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | No |
Tissue expression
|
|
Star sequence |
Dan-Mir-978-v2_5p* |
mirBase accession | None |
Sequence |
0- CAUUCGACGCUGCUGGCUUACGUGG -25
Get sequence
|
Mature sequence |
Dan-Mir-978-v2_3p |
mirBase accession | None |
Sequence |
37- GUGUCCAGUGACGUUGAUUGCAG -60
Get sequence
|