| MirGeneDB ID | Dmo-Novel-5-P5 |
|---|
| Family name |
DMO-NOVEL-5 (all species) |
|---|
| Seed |
GCGAGCC |
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| Species |
Fruit fly (Drosophila mojavensis) |
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| MiRBase ID |
|
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| Paralogues |
Dmo-Novel-5-P1a
Dmo-Novel-5-P1b
Dmo-Novel-5-P2
Dmo-Novel-5-P3
Dmo-Novel-5-P4
|
|---|
| Orthologues |
|
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| Node of Origin (locus) |
D. mojavensis
|
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| Node of Origin (family) |
D. mojavensis
|
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Genome context
(Dmoj_caf1) |
scaffold_6308: 1309592-1309653 [+]
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
AUAGAAAAAAUCUAAACUAAAACAUUUGUCUGCGAGCCAGAAUCUAGUGAAAUACGUUUUAGUUCGGGUAUCACUAGAUUCUAGGUCGUUGACAAAAUGCUUUGCUUUGCAACAGAAAAAUC
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
AUAGAAAAAAUCUAAAC- A -| U G - A ACGUUU
UAAA CA UUUGUC GCGA CC AGAAUCUAGUGA AU U
GUUU GU AAACAG UGCU GG UCUUAGAUCACU UG A
CUAAAAAGACAACGUUUC C A^ U - A A GGCUUG
120 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | CNNC at 3p(+17) |
|---|
Tissue expression
|
|
|---|
| Mature sequence |
Dmo-Novel-5-P5_5p |
| mirBase accession | None |
|---|
| Sequence |
0- UGCGAGCCAGAAUCUAGUGAAAU -23
Get sequence
|
|---|
| Star sequence |
Dmo-Novel-5-P5_3p* |
| mirBase accession | None |
|---|
| Sequence |
40- UCACUAGAUUCUAGGUCGUUGA -62
Get sequence
|
|---|
