MirGeneDB ID | Dre-Mir-734 |
Family name |
MIR-734 (all species) |
Seed |
AAAUGCU |
Species |
Zebrafish (Danio rerio) |
MiRBase ID |
dre-mir-734
|
Paralogues |
|
Orthologues |
Gmo-Mir-734
Loc-Mir-734
Mal-Mir-734
|
Node of Origin (locus) |
Neopterygii
|
Node of Origin (family) |
Neopterygii
|
Genome context (danRer11) |
chr1: 34122894-34122960 [+]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
CCUGCUUUGCAUCCUUUGAUAUUGAGAGCUGAACCAUUCUGCAGCAUGGCUGCCUGUGGAUCCUCUGGGGAAAGGUAAAUGCUGCAGAAUCGUACCGUUCUUGGUAUCACUGGUCUUCACUUCACUG
Get precursor sequence
|
Structure | 10 20 30 40 50 60
CCUGCUUUGCAUCCUUU-- UG UGA C G-| GCCUGUGGAU
GAUAU AGAGC AC AUUCUGCAGCAU GCU C
CUAUG UCUUG UG UAAGACGUCGUA UGG C
GUCACUUCACUUCUGGUCA GU CCA C AA^ AAAGGGGUCU
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | UG at 5p(-14), CNNC at 3p(+17) |
Tissue expression
|
Br |
Br |
Em |
Ey |
Gu |
Gu |
He |
Li |
Li |
Ov |
Te |
|
|
|
|
|
|
|
|
|
|
|
|
Star sequence |
Dre-Mir-734_5p* |
mirBase accession | None |
Sequence |
0- GAACCAUUCUGCAGCAUGGCUG -22
Get sequence
|
Mature sequence |
Dre-Mir-734_3p |
mirBase accession | MIMAT0003765 |
Sequence |
45- UAAAUGCUGCAGAAUCGUACCG -67
Get sequence
|
Proposed targets |
TargetScanFish: dre-miR-734
|