MirGeneDB 3.0

MirGeneDB ID

Gmo-Mir-734

Family name MIR-734 (all species)
Seed AAAUGCU
Species Cod (Gadus morhua)
MiRBase ID gmo-mir-734
Paralogues
Orthologues Dre-Mir-734  Loc-Mir-734  Mal-Mir-734 
Node of Origin (locus) Neopterygii
Node of Origin (family) Neopterygii
Genome context
(Gadus_morhua.gadMor1.dna.toplevel)
GeneScaffold_2255: 264673-264732 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CUUCAUGCCACCUCUUUAAUUUCAAGAGCUGAACUAUUCUGCAACAUUUGUUGAUGUGGACCUGUAAGUAAAUGCUGCAGAAUUGUGCUCCUCUUGGGAUUGUUUUUCUCCGCCGCUGCC
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Structure
        10          20        30        40        50         
CUUCAUGCCACCUCUUU--|  UU      CUGA  U        A        GAUGUG 
                   AAU  CAAGAG    AC AUUCUGCA CAUUUGUU      G
                   UUA  GUUCUC    UG UAAGACGU GUAAAUGA      A
CCGUCGCCGCCUCUUUUUG^  GG      CUCG  U        C        AUGUCC 
.       110       100        90        80        70        60
Deep sequencing
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CommentThere is a second Drosha cut -1 on the 5p arm.
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Br Gi He In Li Sk Sp Wh
Star sequence

Gmo-Mir-734_5p*

mirBase accessionNone
Sequence
0- GAACUAUUCUGCAACAUUUGUU -22
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Mature sequence

Gmo-Mir-734_3p

mirBase accessionMIMAT0044184
Sequence
38- UAAAUGCUGCAGAAUUGUGCUC -60
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