MirGeneDB ID | Gmo-Mir-734 |
Family name |
MIR-734 (all species) |
Seed |
AAAUGCU |
Species |
Cod (Gadus morhua) |
MiRBase ID |
gmo-mir-734
|
Paralogues |
|
Orthologues |
Dre-Mir-734
Loc-Mir-734
Mal-Mir-734
|
Node of Origin (locus) |
Neopterygii
|
Node of Origin (family) |
Neopterygii
|
Genome context (Gadus_morhua.gadMor1.dna.toplevel) |
GeneScaffold_2255: 264673-264732 [+]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
CUUCAUGCCACCUCUUUAAUUUCAAGAGCUGAACUAUUCUGCAACAUUUGUUGAUGUGGACCUGUAAGUAAAUGCUGCAGAAUUGUGCUCCUCUUGGGAUUGUUUUUCUCCGCCGCUGCC
Get precursor sequence
|
Structure | 10 20 30 40 50
CUUCAUGCCACCUCUUU--| UU CUGA U A GAUGUG
AAU CAAGAG AC AUUCUGCA CAUUUGUU G
UUA GUUCUC UG UAAGACGU GUAAAUGA A
CCGUCGCCGCCUCUUUUUG^ GG CUCG U C AUGUCC
. 110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
Comment | There is a second Drosha cut -1 on the 5p arm. |
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Star sequence |
Gmo-Mir-734_5p* |
mirBase accession | None |
Sequence |
0- GAACUAUUCUGCAACAUUUGUU -22
Get sequence
|
Mature sequence |
Gmo-Mir-734_3p |
mirBase accession | MIMAT0044184 |
Sequence |
38- UAAAUGCUGCAGAAUUGUGCUC -60
Get sequence
|