| MirGeneDB ID | Loc-Mir-734 |
|---|
| Family name |
MIR-734 (all species) |
|---|
| Seed |
AAAUGCU |
|---|
| Species |
Spotted gar (Lepisosteus oculatus) |
|---|
| MiRBase ID |
|
|---|
| Paralogues |
|
|---|
| Orthologues |
Dre-Mir-734
Gmo-Mir-734
Mal-Mir-734
|
|---|
| Node of Origin (locus) |
Neopterygii
|
|---|
| Node of Origin (family) |
Neopterygii
|
|---|
Genome context
(LepOcu1) |
LG14: 23825473-23825532 [-]
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
CUCGUCAUGUCCUCUUUGAUUUCAAGAGCUGAACUAUUCUGCAACAUUUGUUCAUGUGGUUCUGCUAGUAAAUGCUGCAGAAUUGUGCUUCUCUUAAAAUCAUUCAUCUUCAAACUCACC
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
CUCGUCAUGUCCUCUUU--| C CUGA U A UUCAUGUG
GAUUU AAGAG AC AUUCUGCA CAUUUG G
CUAAA UUCUC UG UAAGACGU GUAAAU U
CCACUCAAACUUCUACUUA^ A UUCG U C GAUCGUCU
. 110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | UG at 5p(-14), CNNC at 3p(+17) |
|---|
Tissue expression
|
| Br |
Br |
He |
He |
He |
He |
Ov |
Ov |
Ov |
Ov |
Te |
Te |
Te |
Te |
To |
| |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|---|
| Star sequence |
Loc-Mir-734_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- GAACUAUUCUGCAACAUUUGUU -22
Get sequence
|
|---|
| Mature sequence |
Loc-Mir-734_3p |
| mirBase accession | None |
|---|
| Sequence |
38- UAAAUGCUGCAGAAUUGUGCUU -60
Get sequence
|
|---|
