MirGeneDB ID | Dya-Mir-955 |
Family name |
MIR-955 (all species) |
Seed |
AUCGUGC |
Species |
Fruit fly (Drosophila yakuba) |
MiRBase ID |
|
Paralogues |
|
Orthologues |
Dan-Mir-955
Dme-Mir-955
Dmo-Mir-955
Dsi-Mir-955
|
Node of Origin (locus) |
Drosophila
|
Node of Origin (family) |
Drosophila
|
Genome context (Drosophila_yakuba.dyak_caf1.dna.toplevel) |
3L: 3844770-3844832 [+]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
AAAUAAGUAAAGUAAACAGCUAAUCAACUCCAUCGUGCAGAAGUUUGAGUGUCCUGUGUGUUGCCUAAUCGCAUUCAAUUUCUGAACGGUAGAGAUGGUACGCUUAGAAACAACCUAAAAUGA
Get precursor sequence
|
Structure | 10 20 30 40 50 60
AAAUAAGUAAAGUAAAC--| UA A C G U CCUGUGUG
AGC AUCA CUC AUCGU CAGAAGUU GAGUGU U
UCG UGGU GAG UGGCA GUCUUUAA CUUACG U
AGUAAAAUCCAACAAAGAU^ CA A A A - CUAAUCCG
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Mature sequence |
Dya-Mir-955_5p |
mirBase accession | None |
Sequence |
0- CAUCGUGCAGAAGUUUGAGUGUC -23
Get sequence
|
Star sequence |
Dya-Mir-955_3p* |
mirBase accession | None |
Sequence |
41- CAUUCAAUUUCUGAACGGUAGA -63
Get sequence
|