MirGeneDB 3.0

MirGeneDB ID

Dsi-Mir-955

Family name MIR-955 (all species)
Seed AUCGUGC
Species Fruit fly (Drosophila simulans)
MiRBase ID dsi-mir-955
Paralogues
Orthologues Dan-Mir-955  Dme-Mir-955  Dmo-Mir-955  Dya-Mir-955 
Node of Origin (locus) Drosophila
Node of Origin (family) Drosophila
Genome context
(Drosophila_simulans.ASM75419v3.dna.toplevel)
3L: 3195958-3196020 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-955)
Mir-282 3L: 3148587-3148651 [+] UCSC Ensembl
Mir-955 3L: 3195958-3196020 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AAGAACUCUUUUUGGCCAGCUAAUCAACUCCAUCGUGCAGAGGUUUGAGUGUCCUGUGUUUUGCCUAAUCGCAUUCAAUUUCUGCACGGUAGAGAUGGUACGCUUAGAAACAACCUAAAGAAA
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Structure
        10          20        30        40        50        60 
AAGAACUCUUUUUGGCC--|  UA    A   C              U      CCUGUGUU 
                   AGC  AUCA CUC AUCGUGCAGAGGUU GAGUGU        U
                   UCG  UGGU GAG UGGCACGUCUUUAA CUUACG        U
AAAGAAAUCCAACAAAGAU^  CA    A   A              -      CUAAUCCG 
 120       110       100        90        80         70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
He Wh
Mature sequence

Dsi-Mir-955_5p

mirBase accessionMIMAT0012447
Sequence
0- CAUCGUGCAGAGGUUUGAGUGUC -23
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Star sequence

Dsi-Mir-955_3p*

mirBase accessionMIMAT0012448
Sequence
41- CAUUCAAUUUCUGCACGGUAGA -63
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