MirGeneDB ID | Ebu-Mir-19-P1f |
Family name |
MIR-19 (all species) |
Seed |
GUGCAAA |
Species |
Inshore hagfish (Eptatretus burgeri) |
MiRBase ID |
|
Paralogues |
Ebu-Mir-19-P2e
|
Orthologues |
|
Node of Origin (locus) |
E. burgeri
|
Node of Origin (family) |
Vertebrata
|
Genome context (Eburgeri_3) |
FYBX02010282.1: 2022285-2022345 [+]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
AGCACUUUCCUCUGACGGCUCAUUUCCCUCAGCUUUGCUGGUAGGCACAGCCGUUGCUCUGGUUGAGCUGUGCAAACCUAUGCAAAGCUGAGGGUGGUGAGGCACUGUGCCGUGAGAGCCA
Get precursor sequence
|
Structure | 10 20 30 40 50
AGCACUUUCCUCUGACGG-- UU U--| AG CGUUGCU
CUCAU CCCUCAGCUUUGC GGU GCACAGC \
GAGUG GGGAGUCGAAACG CCA CGUGUCG C
ACCGAGAGUGCCGUGUCACG GU UAU^ AA AGUUGGU
. 110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | No |
Tissue expression
|
|
Star sequence |
Ebu-Mir-19-P1f_5p* |
mirBase accession | None |
Sequence |
0- AGCUUUGCUGGUAGGCACAGC -21
Get sequence
|
Mature sequence |
Ebu-Mir-19-P1f_3p |
mirBase accession | None |
Sequence |
38- UGUGCAAACCUAUGCAAAGCUGA -61
Get sequence
|